FC923922

Overview
NameFC923922
Unique NameFC923922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 4.075e-63
Identity = 108/152 (71.05%), Postives = 125/152 (82.24%), Query Frame = 1
Query:   28 SKREIAAFFAHVTHETGHFCYIEEINKSNR-YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            SKREIAAFFAHVTHETGH CYI EIN +N  YCD+ NKQ+PC PGK YYGRGP+Q++ N NYG AGK IGFDGLR P+ VA+DP +SFKTA+WFWM NVH V++QGFGATI+ INGA+EC GK P  V AR+ YYKDYC +FGV+PG NL C
Sbjct:  134 SKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.920e-61
Identity = 106/152 (69.74%), Postives = 123/152 (80.92%), Query Frame = 1
Query:   28 SKREIAAFFAHVTHETGHFCYIEEINKSNR-YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            SKREIAAFFAHVTHETGH CYI EIN ++  YCD+ NKQ+PC PGK YYGRGP+Q++ N NYG AG+ IGFDGLR P+ VA+DP +SFKTA+WFWM NVH V+ QGFGATI+ INGA+EC GK P  V AR+ YYKDYC +FGV PG NL C
Sbjct:  137 SKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.814e-61
Identity = 106/160 (66.25%), Postives = 124/160 (77.50%), Query Frame = 1
Query:    4 FGSGSPEVS-KREIAAFFAHVTHETGHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            F  G  EV  KREIAAFFAHVTHETGHFCYI EINKSN YCD  N+Q+PC  G+ YYGRGP+Q++ N NYG AG+ IGF+GL  P  VA+D V++FKTA+WFWM NVH V+ QGFGATI+ INGA+EC G  PAQ+ AR+GYYK YC +  V PGPNL C
Sbjct:  121 FAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.663e-59
Identity = 101/156 (64.74%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   13 GSPEVSKREIAAFFAHVTHETGHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            GS    KREIAAFFAH THETGHFCYI EINKSN YCD   +Q+PC  G+ YYGRGP+Q++ N NYG AG+AIGFDGL  P  VA+D VV+FK A+WFWM +VH VV QGFGAT + +  A+ECGG  PAQ+ AR+GYY+ YC + GV PGPNL+C
Sbjct:  114 GSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.825e-56
Identity = 103/158 (65.19%), Postives = 123/158 (77.85%), Query Frame = 1
Query:   13 GSPEVSKREIAAFFAHVTHETGHFCYIEEINKSNR-YCDEQN-KQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            GS + SKREIAA FAH THETGHFCYIEEI+ +++ YCDE++  QYPC   K Y+GRGPIQL+ N NYG AG A  FDGL APETV+ D VVSFKTA+W+WM +V PV+NQGFGATI+ INGA+EC G  P  VQAR+ YY +YC + GVA G NL+C
Sbjct:  113 GSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.027e-54
Identity = 97/160 (60.62%), Postives = 121/160 (75.62%), Query Frame = 1
Query:    4 FGSGSPEVSKREIAAFFAHVTHETGHFCYIEEINKSNR-YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            F + +  V++REIA  FAH THETGHFCYIEEIN ++R YCDE N+QYPC PGK Y+GRGPIQL+ N NYGA G+++  + L  PE V+ +P V+F+T +WFWM +V PV+NQGFGATI+ ING +EC G     V ARI YY+DYC + GV PGPNLSC
Sbjct:  110 FPNFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.453e-52
Identity = 95/160 (59.38%), Postives = 120/160 (75.00%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGHFCYIEEIN-KSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHP--VVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +GS + SKREIAAFFAH  HET  FCYIEEI+  S  YCDE + Q+PC+ GK YYGRGP+Q++ N NYG AG++IGFDGL  P+ VA+ PV++F+TA+W+W  NVH   V  QGFGATI+ INGA+EC GK P  V  R+ YY+ +C +FGV PG NL+C
Sbjct:  112 TGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.972e-51
Identity = 98/164 (59.76%), Postives = 119/164 (72.56%), Query Frame = 1
Query:    1 QFGS-GSPEVSKREIAAFFAHVTHETGHFCYIEEINKS--NRYCDEQNK-QYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +FG+ GS + +KREIAAFFAH++HET + C+IEE +    + YCD+    QYPC  GK YYGRGP+QL+ N NY  AG+AIGFDGL  PE VA D   SFK A+WFWMTNVH V+NQGFGAT + INGA+EC G+   Q   RI +YK YC  FGVAPG NL+C
Sbjct:  125 KFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.077e-47
Identity = 92/158 (58.23%), Postives = 116/158 (73.42%), Query Frame = 1
Query:   22 EVSKREIAAFFAHVTHETGHFCYIEEIN-KSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWM-TNVHPVV---NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            E  KREIAA+FAHVTHETGH CYIEE +  +N YC E ++QYPC P K Y+GRGP+QL+ N NY  AGK + FDGL  P+ V +DP++SFKT++WFW+   V  V+   NQGFGATI+ ING  EC G   AQ+ AR+GYY++YC + GV+PG NL C
Sbjct:   94 EDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQE-SQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.000e-39
Identity = 83/191 (43.46%), Postives = 107/191 (56.02%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +G  +  KRE+AAF A ++HET                CY EEIN  + YCD  +KQ+PC PGK Y+GRGPIQ++ N NYG AG+A+GFDGLR PE VA    ++F+TA+WFWMT      + H V+                 GFG     +NG +EC     A+V  RIG+Y+ YC   GV  GPNL C
Sbjct:   94 TGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDC 284          
The following BLAST results are available for this feature:
BLAST of FC923922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ4.075e-6371.05Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ2.920e-6169.74Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE3.814e-6166.25Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE4.663e-5964.74Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU4.825e-5665.19Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_BRANA2.027e-5460.63Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI6_ORYSJ1.453e-5259.38Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU7.972e-5159.76Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA1.077e-4758.23Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI10_ORYSJ7.000e-3943.46Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC31710E01EF StrClemenN Citrus clementina cDNA clone C31710E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923922 ID=FC923922; Name=FC923922; organism=Citrus clementina; type=EST; length=596bp
CAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAGCGTGAGATTGCTGCATT
TTTTGCACACGTCACTCATGAAACTGGACATTTCTGCTACATAGAAGAGA
TTAACAAGTCCAACAGGTACTGTGATGAACAAAACAAACAGTACCCATGT
GTTCCCGGAAAGTTCTACTACGGCCGTGGACCGATCCAACTCACCGGAAA
TGGCAACTACGGAGCTGCCGGAAAAGCCATCGGGTTTGACGGATTAAGAG
CTCCCGAAACGGTGGCCAAGGACCCCGTTGTGTCATTTAAGACTGCCGTG
TGGTTTTGGATGACCAATGTGCACCCAGTTGTGAACCAAGGTTTTGGTGC
AACAATTCAGAGAATCAATGGTGCCGTTGAATGCGGTGGCAAGCAACCTG
CTCAGGTTCAAGCTCGCATTGGATATTATAAGGATTATTGCAACAAATTT
GGTGTTGCTCCTGGCCCAAATCTCTCTTGTTAAAATGTTTTCGCCGATAC
TTCACTGGCTTGTTGAAATAATGTGGTGTAATTTTATAATATAGGGCGGT
TTCATGTACCTAAAACAAAATAAATTGAAGAAATAAAAGGGTGTTG
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