FC923929

Overview
NameFC923929
Unique NameFC923929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: METC_ARATH (Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.907e-54
Identity = 84/141 (59.57%), Postives = 100/141 (70.92%), Query Frame = 3
Query:   42 VEKEIDVSTSALVDDVAXXXXXXXXXXXXPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 464
            +EK +D  T + V++                VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENG YDYTRSGNPTRDALES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS+V P++G
Sbjct:   57 MEKSVDGQTHSTVNNTTDSLNTMNIKEEA-SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG 196          

HSP 2 Score: 67.0106 bits (162), Expect = 8.907e-54
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  547 IFRRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 666
            + +RVNT  LDEVA+AIGP TKLVW+ESPTNPRQQI DIR
Sbjct:  198 VVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIR 237          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: CBL_SCHPO (Cystathionine beta-lyase OS=Schizosaccharomyces pombe GN=str3 PE=2 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.853e-23
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  135 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS 443
            V T L++     D Y A S P+YQ+ATFKQP     G +DYTRSGNPTR  L+               ++GM+AL  +     +   +VAG DLYGG+DRLLS
Sbjct:    9 VDTELVHVEGNEDQYHASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLMKAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLS 111          

HSP 2 Score: 43.1282 bits (100), Expect = 1.853e-23
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 1
Query:  559 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 666
            V+T DL    +A+ P T LV +ESPTNPR  ICDIR
Sbjct:  124 VDTSDLAAFEAALRPDTNLVLIESPTNPRISICDIR 159          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.365e-22
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  180 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 464
            GA+S P+YQ +T+KQP A ++  Y+Y+R+ NPTR ALE+             F+SGMAA+ AV  L  +G+ +V  DD+YGGT R++++V  + G
Sbjct:   19 GAVSVPIYQVSTYKQPKAGQHTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAITAVMMLFNSGDHVVLTDDVYGGTYRVMTKVLNRLG 113          

HSP 2 Score: 36.1946 bits (82), Expect = 4.365e-22
Identity = 16/35 (45.71%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  559 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 663
            V+T   +EV  AI P TK +++E+PTNP  +I D+
Sbjct:  119 VDTSSREEVEKAIRPNTKAIYIETPTNPLLKITDL 153          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: METB_HELPJ (Cystathionine gamma-synthase OS=Helicobacter pylori J99 GN=metB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.659e-21
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  162 NEFDPYGALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 464
            NE    GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE              F SG+A + AV  LL +G+ ++ GDD+YGG  RL ++V  K G
Sbjct:   13 NEDATTGAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLLQSGDHVLLGDDVYGGNFRLFNKVLVKNG 113          

HSP 2 Score: 35.039 bits (79), Expect = 4.659e-21
Identity = 14/35 (40.00%), Postives = 25/35 (71.43%), Query Frame = 1
Query:  559 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 663
            ++T DL ++  AI P TK +++E+P+NP  +I D+
Sbjct:  119 IDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDL 153          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.060e-21
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  180 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 464
            GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE              F SG+A + AV  LL +G+ ++ GDD+YGGT RL ++V  K G
Sbjct:   19 GAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNG 113          

HSP 2 Score: 34.2686 bits (77), Expect = 6.060e-21
Identity = 13/35 (37.14%), Postives = 25/35 (71.43%), Query Frame = 1
Query:  559 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 663
            ++T D+ ++  AI P TK +++E+P+NP  +I D+
Sbjct:  119 IDTSDISQIKKAIKPNTKALYLETPSNPLLKITDL 153          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.334e-20
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  180 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 464
            GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE              F+SG+A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG
Sbjct:   20 GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTG 114          

HSP 2 Score: 31.187 bits (69), Expect = 1.334e-20
Identity = 13/40 (32.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  547 IFRRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 666
            I+  V+  +LD++ +A    TK ++ E+P+NP  ++ DI+
Sbjct:  116 IYDLVDLSNLDDLKAAFKEETKAIYFETPSNPLLKVLDIK 155          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.334e-20
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  180 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 464
            GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE              F+SG+A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG
Sbjct:   20 GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTG 114          

HSP 2 Score: 31.187 bits (69), Expect = 1.334e-20
Identity = 13/40 (32.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  547 IFRRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 666
            I+  V+  +LD++ +A    TK ++ E+P+NP  ++ DI+
Sbjct:  116 IYDLVDLSNLDDLKAAFKEETKAIYFETPSNPLLKVLDIK 155          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.818e-20
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  180 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 464
            GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE              F+SG+A + AV  L   G+ I+  DD+YGGT RL+ +V  KTG
Sbjct:   20 GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGIHAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTG 114          

HSP 2 Score: 30.0314 bits (66), Expect = 3.818e-20
Identity = 13/40 (32.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  547 IFRRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 666
            I+  V+  +L+++ +A    TK V+ E+P+NP  ++ DI+
Sbjct:  116 IYDLVDLSNLEDLKAAFKAETKAVYFETPSNPLLKVLDIK 155          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.092e-19
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  180 GALSTPLYQTATFKQPS-ATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRV 449
            GA+  P+  + TF QPS    +  YDY+RSGNPTR A E              F SG+A L  +THLL +G+E+++ DD+YGGT R  +RV
Sbjct:   25 GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLATLTTITHLLKSGDEVISIDDVYGGTRRYFTRV 115          

HSP 2 Score: 38.1206 bits (87), Expect = 1.092e-19
Identity = 16/39 (41.03%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  550 FRRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 666
            F  V+   LD++ +A    T+LVW+E+PTNP  ++ DI+
Sbjct:  123 FSFVDLSTLDDLKNAFTDKTRLVWIETPTNPLLKVADIK 161          
BLAST of FC923929 vs. ExPASy Swiss-Prot
Match: METC_BACSU (Cystathionine beta-lyase metC OS=Bacillus subtilis GN=metC PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.123e-19
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  180 GALSTPLYQTATFKQPSATENGAYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 464
            GA+S P+   +TF Q S  E GAYDY+RSG PTR ALE              F+SGMAA++    LL  G+ ++  +D+YGGT R+++ V  + G
Sbjct:   24 GAVSVPIQHASTFHQSSFEEFGAYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAISTAFLLLSQGDHVLVTEDVYGGTFRMVTEVLTRFG 118          

HSP 2 Score: 35.4242 bits (80), Expect = 3.123e-19
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 1
Query:  559 VNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 666
            V+  D +EVA +I P TK++++E+P+NP   I DI+
Sbjct:  124 VDMTDRNEVARSIKPNTKVIYMETPSNPTLGITDIK 159          
The following BLAST results are available for this feature:
BLAST of FC923929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
METC_ARATH8.907e-5459.57Cystathionine beta-lyase, chloroplastic OS=Arabido... [more]
CBL_SCHPO1.853e-2343.69Cystathionine beta-lyase OS=Schizosaccharomyces po... [more]
MCCB_BACSU4.365e-2243.16Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
METB_HELPJ4.659e-2142.57Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METB_HELPY6.060e-2144.21Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METC_LACLM1.334e-2045.26Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA1.334e-2045.26Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLC3.818e-2045.26Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
CGL_DICDI1.092e-1943.96Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
METC_BACSU3.123e-1942.11Cystathionine beta-lyase metC OS=Bacillus subtilis... [more]

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Properties
Property NameValue
Genbank descriptionC31710E11EF StrClemenN Citrus clementina cDNA clone C31710E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923929 ID=FC923929; Name=FC923929; organism=Citrus clementina; type=EST; length=742bp
GAAGCCTTTCGTCTCCGATGCCTACACTGATCTCACCAACAGTGGAAAAG
GAAATTGATGTCAGCACTTCAGCTCTTGTGGATGATGTAGCTGAGTGTTT
GGAAGAAGAAATGAGCGTGGAGGAGGAGCCTGGTGTTTCTACATTATTGA
TGAATTTTTCTAATGAGTTTGATCCTTATGGTGCGTTGAGCACTCCGCTT
TATCAGACTGCGACATTTAAGCAACCTTCTGCGACAGAGAATGGCGCCTA
TGATTATACCAGAAGTGGAAATCCTACACGAGATGCCTTAGAAAGCCTCC
TTGCAAAGCTTGATAAGGCCGACCAAGCGCTTTGCTTCACCAGCGGAATG
GCTGCTTTGGCTGCTGTTACTCATCTTCTTGGAACTGGTGAAGAAATTGT
TGCTGGAGATGACCTGTATGGTGGTACTGATCGTTTGTTATCACGAGTAA
CTCCTAAAACTGGGGTTGTAGTGAAGTTAGTATATCCTCTTGTTTTGCTC
ATTGTGATTTTGCTGTAGTTGAAATTTGAGGTAATTATGCATGAAAATAT
TTAGGCGTGTGAATACATGCGATCTAGATGAGGTTGCCTCTGCTATTGGT
CCTTGGACAAAGCTTGTCTGGGTGGAAAGTCCAACCAACCCTCGACAACA
AATTTGTGACATTCGTGTAAGACATTTAGCTTTTTAAATTATGAATCTTG
TTTTTTAGTACATTTAGGTGTTCGATCGCTTGCTTAACTATG
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