FC923930

Overview
NameFC923930
Unique NameFC923930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923930 vs. ExPASy Swiss-Prot
Match: GOS11_ARATH (Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.674e-73
Identity = 143/172 (83.14%), Postives = 152/172 (88.37%), Query Frame = 3
Query:  207 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAEDDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHATINRSTGQMDSVISQAQATLGALGFSRSTLG 722
            MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D  E DLE+GID LL+QLQQVN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  INR+T QMD VISQAQATLG L F RST G
Sbjct:    1 MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFG 171          
BLAST of FC923930 vs. ExPASy Swiss-Prot
Match: GOS12_ARATH (Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 66/184 (35.87%), Postives = 99/184 (53.80%), Query Frame = 3
Query:  201 SAMDVPSS-WDALRKQARKLEAQLDEQMHSYRKLVS--SKGSTKVDAAEDDLESGIDW---------LLKQLQQVNIQMQDWVSSGG-SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHATINRSTGQMDSVISQAQATLGALGFSRS 713
            S++D+  S W+ LR++ARK+E  LD ++ SY KL +  ++G   VD     + SG  W         LL++L  +N  M    +S   +  V+  L RH++IL + TQEF R++ ++ + +EHA LL   R  D        G  SP   +L+E A+I+ S   +D VI QAQAT   LG  RS
Sbjct:    4 SSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGY-VDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDILHEYTQEFRRIKGNINSLREHAELLSSVR--DDISEYKASGSMSPGVQVLRERASIHGSISHIDDVIGQAQATRAVLGSQRS 184          
BLAST of FC923930 vs. ExPASy Swiss-Prot
Match: GOSR1_HUMAN (Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 60/187 (32.09%), Postives = 91/187 (48.66%), Query Frame = 3
Query:  204 AMDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKG-STKVDAAEDDLESG--------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQAT 686
            A    S W+ LRKQAR+LE +LD ++ S+ KL +S   S+  D   D   S                     I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT
Sbjct:    2 AAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187          
BLAST of FC923930 vs. ExPASy Swiss-Prot
Match: GOSR1_CRIGR (Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKG-STKVDAAEDDLESG--------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQAT 686
            W+ LRKQAR+LE +LD ++ S+ KL +S   S+  D   D   S                     I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187          
BLAST of FC923930 vs. ExPASy Swiss-Prot
Match: GOSR1_BOVIN (Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKG-STKVDAAEDDLESG--------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQAT 686
            W+ LRKQAR+LE +LD ++ S+ KL +S   S+  D   D   S                     I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187          
BLAST of FC923930 vs. ExPASy Swiss-Prot
Match: GOSR1_RAT (Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 58/180 (32.22%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKG-STKVDAAEDDLESG--------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQAT 686
            W+ LRKQAR+LE +LD ++ S+ KL +S   S+  D   D   S                     I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187          
BLAST of FC923930 vs. ExPASy Swiss-Prot
Match: GOSR1_PONAB (Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 56/178 (31.46%), Postives = 90/178 (50.56%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKG-STKVDAAEDDLESG------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQAT 686
            W+ LRKQAR+LE +LD ++ S+ KL +S   S+  D   D  ++                   I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  + +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMSIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 185          
BLAST of FC923930 vs. ExPASy Swiss-Prot
Match: GOSR1_MOUSE (Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 58/180 (32.22%), Postives = 86/180 (47.78%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKG-STKVDAAEDDLESG--------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQAT 686
            W+ LRKQAR+LE +LD ++ S  KL +S   S   D   D   S                     I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT
Sbjct:    9 WEDLRKQARQLENELDLKLVSSSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187          
The following BLAST results are available for this feature:
BLAST of FC923930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GOS11_ARATH1.674e-7383.14Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=... [more]
GOS12_ARATH1.178e-1835.87Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=... [more]
GOSR1_HUMAN1.262e-1232.09Golgi SNAP receptor complex member 1 OS=Homo sapie... [more]
GOSR1_CRIGR2.152e-1232.22Golgi SNAP receptor complex member 1 OS=Cricetulus... [more]
GOSR1_BOVIN2.152e-1232.22Golgi SNAP receptor complex member 1 OS=Bos taurus... [more]
GOSR1_RAT3.671e-1232.22Golgi SNAP receptor complex member 1 OS=Rattus nor... [more]
GOSR1_PONAB4.794e-1231.46Golgi SNAP receptor complex member 1 OS=Pongo abel... [more]
GOSR1_MOUSE2.379e-1132.22Golgi SNAP receptor complex member 1 OS=Mus muscul... [more]
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Properties
Property NameValue
Genbank descriptionC31710E12EF StrClemenN Citrus clementina cDNA clone C31710E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923930 ID=FC923930; Name=FC923930; organism=Citrus clementina; type=EST; length=732bp
AAAATTTAAAAAAAAAAAAACATTGACCAGTTTTTGGTCATTTTGCCGGT
GTGAGCAGACAATCTGTCCTCGTCTCCAAACAAACGTTATTATATTTAAT
CAACCAACGTATACGAAAGAAATTGAATAAAATCACGCAATTGAATTGAA
GATCAATTTTTAATTTCATTTTTGGTTGACAGATCGATCTGGATTTGGTT
TCAGCGATGGATGTGCCTAGCTCATGGGACGCTTTACGCAAACAGGCGAG
AAAGCTGGAAGCACAGTTGGATGAGCAGATGCATTCCTATCGTAAGTTGG
TTTCCTCTAAGGGTTCTACAAAGGTTGACGCCGCAGAGGATGATCTTGAA
TCTGGGATAGATTGGTTGCTGAAACAGCTACAACAAGTAAATATACAAAT
GCAAGATTGGGTATCGTCAGGAGGATCCGAAATGGTTTCACATACTTTGA
CTCGTCATCAGGAAATTCTTCAAGATCTTACTCAGGAGTTTTATCGTCTC
CGCTCCAGCCTTAAAGCTAAGCAAGAGCATGCTTCGCTACTTGAGGACTT
TAGGGAGTTTGATCGGACCAGATTAGATTTAGAAGATGGTGTTGGTTCTC
CAGAGCAAGCTTTACTTAAAGAACACGCGACTATTAATCGAAGTACAGGA
CAGATGGATTCTGTGATTTCTCAAGCTCAAGCAACTCTCGGTGCTCTGGG
CTTTTCACGTTCAACATTGGGGGCATCAATTC
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