FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ARATH (Formate--tetrahydrofolate ligase OS=Arabidopsis thaliana GN=THFS PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 4.211e-110
Identity = 197/243 (81.07%), Postives = 209/243 (86.01%), Query Frame = 3
Query:   48 SKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            S + RKL+VVSPVPADIDIANSVEPLHISEIA++LN+ P HYDLYGKYKAKVLLS  DEL+G  DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA+LDKKVVTCLRQPSQGPTFGIK       YSQVIPMDEFNLHLTGDIH               RIFHE SQSDKALFNRLCPPNKEG+RSFS+IMFRRL KLGISKT PE+LTPEEI +FARLDIDPASITWR+VMDVNDRFLRKIT
Sbjct:    2 SSSTRKLEVVSPVPADIDIANSVEPLHISEIAKDLNINPLHYDLYGKYKAKVLLSAFDELQGQEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDKALFNRLCPPNKEGKRSFSDIMFRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRRVMDVNDRFLRKIT 244          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SPIOL (Formate--tetrahydrofolate ligase OS=Spinacia oleracea PE=1 SV=3)

HSP 1 Score: 390.578 bits (1002), Expect = 5.147e-108
Identity = 191/244 (78.28%), Postives = 210/244 (86.07%), Query Frame = 3
Query:   45 SSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            SSKTVRKL+V +PVPADIDIAN+VEPLHI++IA +LNL P HYDLYGKYKAKVLLSVLDE++ + DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIK       YSQVIPMDEFNLHLTGDIH               R+FHE++QSDKALFNRLCPPNKEG+R+F NIM RRLKKLGI KT P+DLTPEE+ +FARLDIDP SITWR+VMDVNDRFLRKI+
Sbjct:    4 SSKTVRKLEVATPVPADIDIANAVEPLHIADIAADLNLSPRHYDLYGKYKAKVLLSVLDEVQETQDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRMFHESTQSDKALFNRLCPPNKEGKRTFCNIMHRRLKKLGIDKTNPDDLTPEEVTKFARLDIDPDSITWRRVMDVNDRFLRKIS 247          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TC_HUMAN (C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 4.398e-75
Identity = 146/237 (61.60%), Postives = 172/237 (72.57%), Query Frame = 3
Query:   66 LQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            L + +PVP+DIDI+ S +P  I ++A+E+ L     +LYG+ KAKVLLS L+ L+   DG YVVV GITPTPLGEGKSTTT+GL QALGA L + V  C+RQPSQGPTFGIK       YSQVIPM+EFNLHLTGDIH               RIFHE +Q+DKALFNRL  P+  G R FS+I  RRLK+LGI KT P  LT EEINRFARLDIDP +ITW++V+D NDRFLRKIT
Sbjct:  310 LNLKTPVPSDIDISRSCKPKPIGKLAREIGLLSEEVELYGETKAKVLLSALERLKHRPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAHLYQNVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLV-PSVNGVRRFSDIQIRRLKRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKIT 545          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TC_RAT (C-1-tetrahydrofolate synthase, cytoplasmic OS=Rattus norvegicus GN=Mthfd1 PE=1 SV=3)

HSP 1 Score: 279.641 bits (714), Expect = 1.280e-74
Identity = 145/238 (60.92%), Postives = 171/238 (71.85%), Query Frame = 3
Query:   63 KLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            KL + +PVP+DI I+ S +P  I  +A+E+ L     +LYG+ KAKVLLS LD L+   DG YVVV GITPTPLGEGKSTTT+GL QALGA L + V  C+RQPSQGPTFGIK       YSQVIPM+EFNLHLTGDIH               RIFHE +Q+DKALFNRL  P+  G R FS+I  RRL++LGI KT P  LT +EINRFARLDIDP +ITW++V+D NDRFLRKIT
Sbjct:  309 KLNLKTPVPSDIAISRSCKPKLIGNLAREIGLLTEEVELYGETKAKVLLSALDRLKHQPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAHLHQNVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLV-PSVNGVRKFSDIQIRRLRRLGIEKTDPAALTDDEINRFARLDIDPETITWQRVLDTNDRFLRKIT 545          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TC_PONAB (C-1-tetrahydrofolate synthase, cytoplasmic OS=Pongo abelii GN=MTHFD1 PE=2 SV=3)

HSP 1 Score: 279.256 bits (713), Expect = 1.671e-74
Identity = 146/237 (61.60%), Postives = 171/237 (72.15%), Query Frame = 3
Query:   66 LQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            L + +P P+DIDI+ S +P  I ++A+E+ L     +LYG+ KAKVLLS L+ L+   DG YVVV GITPTPLGEGKSTTTVGL QALGA L + V  C+RQPSQGPTFGIK       YSQVIPM+EFNLHLTGDIH               RIFHE +Q+DKALFNRL  P+  G R FS+I  RRLK+LGI KT P  LT EEINRFARLDIDP +ITW++V+D NDRFLRKIT
Sbjct:  310 LNLKTPDPSDIDISRSCKPKPIGKLAREIGLLSEEVELYGETKAKVLLSALERLKHRPDGKYVVVTGITPTPLGEGKSTTTVGLVQALGAHLYQNVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAFTAANNLVAAAIDARIFHELTQTDKALFNRLV-PSVNGVRKFSDIQIRRLKRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKIT 545          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TC_MOUSE (C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus musculus GN=Mthfd1 PE=1 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.183e-74
Identity = 145/238 (60.92%), Postives = 171/238 (71.85%), Query Frame = 3
Query:   63 KLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            KL + +PVP+DI I+ S +P  I  +A+E+ L     +LYG+ KAKVLLS LD L+   DG YVVV GITPTPLGEGKSTTT+GL QALGA L + V  C+RQPSQGPTFGIK       YSQVIPM+EFNLHLTGDIH               RIFHE +Q+DKALFNRL  P+  G R FS+I  RRL++LGI KT P  LT +EINRFARLDIDP +ITW++V+D NDRFLRKIT
Sbjct:  309 KLNLKTPVPSDIAISRSCKPKLIGNLAREIGLLTEEVELYGETKAKVLLSALDRLKYQPDGKYVVVTGITPTPLGEGKSTTTIGLVQALGAHLRQNVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLV-PSVNGIRKFSDIQIRRLRRLGIEKTDPTTLTDDEINRFARLDIDPETITWQRVLDTNDRFLRKIT 545          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TM_HUMAN (Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.572e-71
Identity = 137/238 (57.56%), Postives = 168/238 (70.59%), Query Frame = 3
Query:   63 KLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            KLQ +SPVP+DI+I+    P  +  +A+E+ L  +  ++YGK KAKV LSVL+ L+  ADG YV+V GITPTPLGEGKST T+GL QAL A L+     CLRQPSQGPTFG+K       Y+QVIPM+EFNLHLTGDIH               RI HE +Q+DKAL+NRL  P   G R FS I   RLKKLGI+KT P  LT EE+++FARLDIDP++ITW++V+D NDRFLRKIT
Sbjct:  352 KLQPLSPVPSDIEISRGQTPKAVDVLAKEIGLLADEIEIYGKSKAKVRLSVLERLKDQADGKYVLVAGITPTPLGEGKSTVTIGLVQALTAHLNVNSFACLRQPSQGPTFGVKGGAAGGGYAQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTRILHENTQTDKALYNRLV-PLVNGVREFSEIQLARLKKLGINKTDPSTLTEEEVSKFARLDIDPSTITWQRVLDTNDRFLRKIT 588          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TM_BOVIN (Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Bos taurus GN=MTHFD1L PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 4.260e-70
Identity = 135/238 (56.72%), Postives = 169/238 (71.01%), Query Frame = 3
Query:   63 KLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            KLQ +SPVP+DI+I+ +  P  +  +A+E+ L  +  ++YGK KAKV LS+L+ L+  ADG YV+V GITPTPLGEGKST T+GL QAL A L+     CLRQPSQGPTFG+K       Y+QVIPM+EFNLHLTGDIH               RI HE +Q+DKAL+NRL  P+  G R FS I   RLK+LGI+KT P  LT EE+ +FARLDIDP++ITW++V+D NDRFLRKIT
Sbjct:  349 KLQPLSPVPSDIEISRAQTPKAVEILAKEIGLLADEIEIYGKSKAKVRLSLLERLKDQADGKYVLVAGITPTPLGEGKSTVTIGLVQALTAHLNVNSFACLRQPSQGPTFGVKGGAAGGGYAQVIPMEEFNLHLTGDIHAITAANNLLAAAIDARILHENTQTDKALYNRLV-PSVNGVREFSKIQLARLKRLGINKTDPSALTEEEMRKFARLDIDPSTITWQRVVDTNDRFLRKIT 585          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TM_MOUSE (Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Mus musculus GN=Mthfd1l PE=1 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.239e-69
Identity = 135/238 (56.72%), Postives = 165/238 (69.33%), Query Frame = 3
Query:   63 KLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            KLQ +SPVP+DI+I+    P  +  +A+E+ L  +  ++YGK KAKV LS+L+ L+   DG YV+V GITPTPLGEGKST T+GL QAL A L      CLRQPSQGPTFG+K       Y+QVIPM+EFNLHLTGDIH               RI HE++Q+DKAL+NRL  P   G R FS I   RLKKLGI KT P  LT EE+ +FARL+IDPA+ITW++V+D NDRFLRKIT
Sbjct:  351 KLQPLSPVPSDIEISRGQTPKAVDVLAKEIGLLADEIEIYGKSKAKVQLSLLERLKDQTDGKYVLVAGITPTPLGEGKSTVTIGLVQALTAHLKVNSFACLRQPSQGPTFGVKGGAAGGGYAQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTRILHESTQTDKALYNRLV-PLVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQRVLDTNDRFLRKIT 587          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TC_SCHPO (C-1-tetrahydrofolate synthase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPBC839.16 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.375e-67
Identity = 132/241 (54.77%), Postives = 166/241 (68.88%), Query Frame = 3
Query:   54 TVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            T+  L++ +PVP+DI+IA S  P +I ++A E+ +  +  + YG +KAKV L +L  L    DG+YVVV GITPTP GEGKST T GL QAL + LDK  + C+RQPSQGPTFGIK       YSQ IPM+EFNLHLTGDIH               R+FHE +QSD AL+ RL    K  +R F+ +MFRRLKKLGI KT PE+LT EE  +FARLDI+P++I+W + +DVNDRFLRKIT
Sbjct:  300 TLLPLKLQTPVPSDIEIARSQTPKNIGDLASEIGIAKSELEFYGSHKAKVNLEILQRLAHRRDGHYVVVTGITPTPFGEGKSTLTAGLVQAL-SNLDKLAIACVRQPSQGPTFGIKGGAAGGGYSQFIPMEEFNLHLTGDIHAITAATNLLAAAIDTRMFHENTQSDAALYKRLTLV-KGNKREFAPVMFRRLKKLGIDKTNPEELTEEEQRKFARLDIEPSTISWNRTLDVNDRFLRKIT 538          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_ARATH4.211e-11081.07Formate--tetrahydrofolate ligase OS=Arabidopsis th... [more]
FTHS_SPIOL5.147e-10878.28Formate--tetrahydrofolate ligase OS=Spinacia olera... [more]
C1TC_HUMAN4.398e-7561.60C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo... [more]
C1TC_RAT1.280e-7460.92C-1-tetrahydrofolate synthase, cytoplasmic OS=Ratt... [more]
C1TC_PONAB1.671e-7461.60C-1-tetrahydrofolate synthase, cytoplasmic OS=Pong... [more]
C1TC_MOUSE2.183e-7460.92C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus ... [more]
C1TM_HUMAN6.572e-7157.56Monofunctional C1-tetrahydrofolate synthase, mitoc... [more]
C1TM_BOVIN4.260e-7056.72Monofunctional C1-tetrahydrofolate synthase, mitoc... [more]
C1TM_MOUSE1.239e-6956.72Monofunctional C1-tetrahydrofolate synthase, mitoc... [more]
C1TC_SCHPO3.375e-6754.77C-1-tetrahydrofolate synthase, cytoplasmic OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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