FC924926

Overview
NameFC924926
Unique NameFC924926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC924926_ssr6 microsatellite FC924926_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14579 contig Ccv1_Contig14579:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.688e-57
Identity = 118/199 (59.30%), Postives = 144/199 (72.36%), Query Frame = 2
Query:  146 TKVADLQSAAEKKAFPS------SAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTSKV 724
            T++ +++   E K+F        S   K T+VP+ SQKRTAP PVVGWPP+RSFRKNLA  S+SKL    S     +K+ D +   E  ++  FVKINMDGVPIGRKVDLNAY+SYE+LS  VD+LFRGLLAAQRD S G     Q EEK I G+LDG GE+TL YEDNEGD+MLVGDVPW MFVS+V RLRV+K+S++
Sbjct:   60 TEIRNIKKETEDKSFHCFNGNHFSPSNKTTSVPHISQKRTAPGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDG-----QGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEI 253          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.950e-51
Identity = 104/187 (55.61%), Postives = 132/187 (70.59%), Query Frame = 2
Query:  167 SAAEKKAFPSSAPAKNTAVPNSS---QKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTS 718
            S  E++A P  A   N    N++   Q R+   PVVGWPP+R+FR+NLA +S + L          ++ +         ++ PF+KINMDGVPIGRK+DLNA+DSYEKLS AVD+LFRGLLAAQRD    G  + Q+E+ AI+G+LDG+GEYTLVYED EGD++LVGDVPW MFVS+V RLRVLKTS
Sbjct:  105 SPEEEEAHPPPATGNNALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEI---------KRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTS 282          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.659e-49
Identity = 109/175 (62.29%), Postives = 130/175 (74.29%), Query Frame = 2
Query:  215 TAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPA-SESPNDVPSKTVDEKPAH---EPGRKNP-FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTSKV 724
            ++   +S KRTAP PVVGWPP+RSFRKNLA  S+SKL   S + N V  K      A    EP R+   FVKINM GVPIGRKVDL+A++SYE+LS  VD+LFRGLLAAQRD       +  E+EK ITG+LDG+GEYTL YEDNEGD+MLVGDVPW MFVS+V RLRV+KTS++
Sbjct:   82 SSTKTTSHKRTAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRD-----FPSSIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSEI 251          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.826e-46
Identity = 100/182 (54.95%), Postives = 124/182 (68.13%), Query Frame = 2
Query:  179 KKAFPSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTSKV 724
            KK    S P    A  ++ Q R A  PVVGWPPIRSFR+NL   S+ K  + E  ND      D+K A    +K P VKINMDG+PIGRKVDL  YDSY+KLS+AV+ELFRG L AQ+D S      +  E+K  +G+LDG+G YTLVYEDN+GDRML GD+PW +FVSTV RLRV++ S++
Sbjct:  141 KKGCCPSPPCSAAAHSSNPQGRGAIPPVVGWPPIRSFRRNLTNGSSFK-QSPERQND----EADDK-AKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSEL 316          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.526e-46
Identity = 98/179 (54.75%), Postives = 124/179 (69.27%), Query Frame = 2
Query:  191 PSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASK-LPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTSKV 724
            P  APA        +Q R A APVVGWPPIRSFR+NLA +S+SK  P  ++ N     T+  K       KNP VKINMDG+PIGRK+DL AY+SY+ LS+AV +LF G L AQ+D +   +  +  ++K    +LDGSGEYTLVYED+EGDRMLVGDVPW +FVST  RLRVL++S++
Sbjct:  153 PHGAPATPARNRPQTQGRGAAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCK-------KNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSEL 324          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.042e-43
Identity = 96/178 (53.93%), Postives = 115/178 (64.61%), Query Frame = 2
Query:  185 AFPSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTS 718
            A P+ A   N    +      A APVVGWPP+RSFR+NLA +S+S    +  P     +  D+        K  FVKINMDGVPIGRKVDL AY  Y +LSAAVD+LFRGLLAAQ  ++ G      E + A  G + G GEYTLVYED+EGDRMLVGDVPW MF++T  RLRVLK+S
Sbjct:   46 AAPAFALRSNGTNASKPSGAAAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADG------EADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSS 217          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.152e-42
Identity = 100/184 (54.35%), Postives = 125/184 (67.93%), Query Frame = 2
Query:  194 SSAPAKNTAVPNSSQKRTAPA-PVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRD-------SSAGGLVNKQEEEKAITGVLD-GSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTS 718
            +++ A + A  N   K + PA PVVGWPP+RSFR+NLA +S+S  P        P    D   A   G+   FVK+NMDGVPIGRKVDL A+  Y +LSAAVD LFRGLLAAQRD       ++A    +   EE+AI G+LD GSGEYTLVYED+EGD+MLVGDVPW+MF++   RLRVL++S
Sbjct:   35 NTSTAADGAKGNDGFKASRPAAPVVGWPPVRSFRRNLASSSSSSKP--------PRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSS 210          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 75/162 (46.30%), Postives = 96/162 (59.26%), Query Frame = 2
Query:  233 SQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTS 718
            S  R   APVVGWPP+RS R+NL      ++   ES  +                K  +VKINM+GVPIGRKV+L+AY++Y++LS AVD+LF     +++DS                   D + +YTLVYED EGD++LVGDVPW MFVSTV RL VLKTS
Sbjct:   40 SNNRVEVAPVVGWPPVRSSRRNLTAQLKEEMKKKESDEE----------------KELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLF-----SKKDS------------------WDLNRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTS 162          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.550e-29
Identity = 78/195 (40.00%), Postives = 112/195 (57.44%), Query Frame = 2
Query:  158 DLQSAAEKKAFPSSAPAKNTAVPNSSQKRTAPA------PVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP-FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTSK 721
            D +  A+  +  SS+ + + A   +  KRTA +       VVGWPPIR++R N +  + +K  A+E PN   S+ V++  +     +N  FVK+ MDG+PIGRK+DLNA+  YE LS  ++E+F       R     G +     E  +  + DGS    L YED EGD MLVGDVPW MF+ +V RLR++KTS+
Sbjct:   49 DCRVYADDSSSSSSSSSLSRASVIAGIKRTADSMAATSGQVVGWPPIRTYRMN-SMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHM-----ETPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSE 237          
BLAST of FC924926 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.248e-29
Identity = 78/193 (40.41%), Postives = 106/193 (54.92%), Query Frame = 2
Query:  158 DLQSAAEKKAFPSSAPAKNTAVPNSSQKRTAPAPVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP-----FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGLVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKTSK 721
            D  S   K+A  S++ A ++   +SSQ       VVGWPPI S R N    + +   A E       K  D++P     + N      F+K+NMDGV IGRKVDLNA+ SYE L+  ++++F          +  G V    +      +LDGS E+ L YED EGD MLVGDVPW MF+++V RLRV+KTS+
Sbjct:   50 DFPSVGSKRAADSASHAGSSPPRSSSQ-------VVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFF--------RTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSE 227          
The following BLAST results are available for this feature:
BLAST of FC924926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA26_ARATH3.688e-5759.30Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA7_ORYSJ3.950e-5155.61Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA18_ARATH1.659e-4962.29Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA18_ORYSJ3.826e-4654.95Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]
IAA6_ORYSJ6.526e-4654.75Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA2_ORYSJ1.042e-4353.93Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA16_ORYSJ1.152e-4254.35Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA28_ARATH1.907e-2946.30Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA11_ARATH5.550e-2940.00Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA13_ARATH7.248e-2940.41Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM08FM1 TF Citrus clementina cDNA clone KN0AAP1YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924926 ID=FC924926; Name=FC924926; organism=Citrus clementina; type=EST; length=726bp
AGATGATCATCATCATCAGTATCTTCTTTCTCTTGGATACTTCTCTTCCA
CTAACAATAGCAACAACAATGGCTTTTCATTTCTTCATCATCATTCCTCA
CGAAGCTTGCCTGTTATGGCAAAGGAATCCTCACAGCCCTGTTGCACTAA
AGTTGCAGACTTGCAGTCTGCTGCCGAAAAGAAAGCATTTCCATCTTCAG
CTCCTGCAAAAAATACAGCTGTTCCCAACAGCTCTCAGAAAAGGACTGCT
CCTGCTCCAGTGGTGGGCTGGCCTCCAATTCGTTCATTTAGGAAGAATCT
TGCTGGCGCAAGTGCTTCTAAATTACCAGCTTCTGAGTCTCCTAACGATG
TCCCAAGCAAGACTGTTGATGAAAAACCGGCTCATGAGCCTGGCAGGAAA
AACCCTTTTGTGAAGATTAACATGGATGGTGTCCCTATTGGAAGGAAAGT
TGACCTCAATGCTTATGATAGCTATGAAAAACTCTCAGCTGCTGTTGATG
AACTCTTCAGAGGCCTCCTTGCAGCTCAAAGAGATTCCTCTGCTGGTGGA
TTAGTGAACAAGCAAGAGGAAGAGAAAGCAATTACTGGTGTTTTGGATGG
AAGTGGGGAATATACCCTTGTTTATGAGGATAACGAAGGTGACAGGATGC
TGGTTGGGGATGTCCCGTGGCACATGTTTGTATCAACAGTGACAAGGCTG
CGCGTGTTGAAGACCTCTAAAGTTTC
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