FC924929

Overview
NameFC924929
Unique NameFC924929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC924929_ssr89 microsatellite FC924929_ssr89:89..108. BLAST: Citrus ESTs to Prunus persica proteins V1
FC924929_ssr42 microsatellite FC924929_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14580 contig Ccv1_Contig14580:1..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.333e-37
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 2
Query:  401 GGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            GGDSQRS+PTPFLTKTYQLV+DP  D+LI+WN DG+TFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD
Sbjct:   49 GGDSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 126          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.424e-37
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 2
Query:  368 PVEQTSESPATG-GDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            P    +E+   G G  QR++PTPFLTKTYQLVDDP+VDD+I+WN DGSTF+VWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRK+VPD
Sbjct:   26 PPAPAAEAAGVGVGQQQRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPD 115          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.696e-37
Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = 2
Query:  350 GIDPMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            G +P      T+ + A  G  QRSLPTPFLTKTYQLV+DP+VDD+I+WN DGSTF+VWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRK+VPD
Sbjct:   13 GGEPPPAAVMTAAAEALAG--QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPD 105          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.227e-31
Identity = 59/75 (78.67%), Postives = 70/75 (93.33%), Query Frame = 2
Query:  410 SQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            SQRS+PTPFLTKT+ LV+D S+DD+I+WN DGS+FIVW P +FA+DLLPK+FKHNNFSSFVRQLNTYGF+KVVPD
Sbjct:   16 SQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPD 90          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 2
Query:  410 SQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            SQR+ P PFL KTYQLVDD + DD+I+WN  G+TF+VW+ AEFA+DLLPKYFKHNNFSSFVRQLNTYGFRK+VPD
Sbjct:    2 SQRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPD 76          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 55/75 (73.33%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  410 SQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            +QRS+P PFL+KTYQLVDD S DD+++WN +G+ F+VW+ AEFA+DLLP+YFKHNNFSSF+RQLNTYGFRK VPD
Sbjct:    7 AQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPD 81          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 55/73 (75.34%), Postives = 65/73 (89.04%), Query Frame = 2
Query:  416 RSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            +++P PFLTKTYQLVDDP+ D +++W  D +TF+VWRP EFARDLLP YFKHNNFSSFVRQLNTYGFRK+VPD
Sbjct:   29 KAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPD 101          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.148e-29
Identity = 58/85 (68.24%), Postives = 70/85 (82.35%), Query Frame = 2
Query:  383 SESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDG-STFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            S+  A    +Q+++P PFLTKTYQLVDDP+ D +++W  D  STF+VWRP EFARD+LP YFKHNNFSSFVRQLNTYGFRKVVP+
Sbjct:    8 SDCEAAAAAAQKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPE 92          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 2
Query:  350 GIDPMAPVEQTSESPATGGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            G + +  +E++     T   +  + P PFL+KTYQLVDDPS DD+++W  D +TF+VWRP EFARDLLP YFKHNNFSSFVRQLNTYGFRK+V D
Sbjct:    9 GGEMVVSMERSHGRSTTTAAAVTAAPAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVAD 103          
BLAST of FC924929 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.698e-29
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  401 GGDSQRSLPTPFLTKTYQLVDDPSVDDLIAWNSDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPD 634
            G  + + +P PFLTKTYQLVDDP  D +++W  D +TF+VWRP EFARDLLP YFKHNNFSSFVRQLNTYGFRK+V D
Sbjct:   24 GAAAGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVAD 101          
The following BLAST results are available for this feature:
BLAST of FC924929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HFB2B_ARATH3.333e-3789.74Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2B_ORYSJ7.424e-3777.78Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2C_ORYSJ9.696e-3775.79Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFB2A_ARATH1.227e-3178.67Heat stress transcription factor B-2a OS=Arabidops... [more]
HSF24_SOLPE2.313e-3077.33Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSFB1_ARATH5.153e-3073.33Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HSFB4_ARATH6.731e-3075.34Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB4C_ORYSJ1.148e-2968.24Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB4D_ORYSJ1.499e-2961.05Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB4B_ORYSJ5.698e-2970.51Heat stress transcription factor B-4b OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM10FM1 TF Citrus clementina cDNA clone KN0AAP1YM10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924929 ID=FC924929; Name=FC924929; organism=Citrus clementina; type=EST; length=634bp
TCATTTACTCCACTCAGAACCTTCTAGAAACAACAAAACCTAACCCAACC
CAACCCAACACAACACATGCGAACTCATCTCTCTCTAGCTCCCTCCCTCC
CTCCCTCCCTCGCATGCTCACCGTTTGAGGTCATCCATCATTTCTGAACC
TCCTGGTTTTCAACTTTCAACGGCGTCTGATCGAGTTCCAACTTTCAACG
CTGCACGTTGAACAGTGGTTTATTCTTCGCTTGTTAGGTTTGGTGAGAAA
ATAATCAAAATTCCTCTTCATTACCCAACGTACAGATTGAGCGTTAGCAA
TTAGCAGAAGCGAAGAGAGAGTTGCAGGATTGATAGGGTTGGGATCTGAG
GTATTGACCCGATGGCTCCGGTTGAGCAGACGAGCGAATCTCCTGCAACA
GGAGGAGACTCGCAGAGATCTCTTCCGACGCCGTTTTTGACCAAAACTTA
CCAACTGGTTGACGATCCTTCGGTCGATGATTTAATCGCGTGGAACAGCG
ACGGATCGACCTTCATAGTCTGGAGACCAGCGGAATTCGCCAGAGATTTG
TTGCCGAAATATTTTAAACACAACAATTTCTCTAGCTTCGTCCGCCAGCT
CAACACTTACGGATTTAGGAAAGTAGTTCCGGAT
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