FC924934

Overview
NameFC924934
Unique NameFC924934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC924934_ssr365 microsatellite FC924934_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1800 contig Ccv1_Contig1800:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.177e-48
Identity = 102/173 (58.96%), Postives = 121/173 (69.94%), Query Frame = 3
Query:  210 MCYEQKEVGNGVAGEGHGLGSSEEDESRVDDAVNSNNGPGGTIQVHDGFXXXXXXXXXGSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            MC+   E G+ V  E    GSSEEDE RV+D   + N     +Q+               V++WER+LP RSLKVLLVENDDSTRH+V+ALL+NCSYEVTAV + L AW+ILED  + ID+VLTEVDMPV SG GLL KIM+HKTLKNIPV MMS  DSM ++FKCLS GA D
Sbjct:    1 MCFNNIETGDEVETERQVFGSSEEDEFRVEDTARNTNN----VQISQ-----QQQQPLAHVVKWERYLPVRSLKVLLVENDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVD 164          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.525e-42
Identity = 93/170 (54.71%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  225 KEVGNGVAGEGHGLGSSEED--ESRVDDAVNSNNGPGGTIQVHDGFXXXXXXXXXGSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            K  GNG+   GH   S EE+      +D  N ++ P    Q  +             ++RWERFLP ++L+VLLVENDDSTR VVSALLR C YEV    N LHAW+ LEDL NHID+VLTEV MP +SGIGLL KI +HK  K+IPV MMS  DSMG +FKCLSKGA D
Sbjct:   18 KGTGNGILENGHSHKSEEEEWRNGMGEDLPNGHSTPPEPQQTDE------QKEHQVRIVRWERFLPVKTLRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVD 181          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.189e-41
Identity = 92/170 (54.12%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  225 KEVGNGVAGEGHGLGSSEED--ESRVDDAVNSNNGPGGTIQVHDGFXXXXXXXXXGSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            K  GNG+   GH     EE+      +D  N ++ P    Q  +             ++RWERFLP ++L+VLLVENDDSTR VVSALLR C YEV    N LHAW+ LEDL NHID+VLTEV MP +SGIGLL KI +HK  K+IPV MMS  DSMG +FKCLSKGA D
Sbjct:   18 KGTGNGILENGHSHKPEEEEWRNGMGEDLPNGHSTPPEPQQTDE------QKEHQVQIVRWERFLPVKTLRVLLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVD 181          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.859e-41
Identity = 84/150 (56.00%), Postives = 106/150 (70.67%), Query Frame = 3
Query:  279 EDESRVDDAVNSNNGPGGTIQVHDGFXXXXXXXXXGSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            E+E      ++  NG  G +Q+              + + WERFL  R+++VLLVENDD TR++V+ALLRNCSYEV   +N + AWK+LEDL NHIDIVLTEV MP +SGIGLLCKI+ HK+ +NIPV MMS  DSMG++FKCLSKGA D
Sbjct:   36 EEEKTNGITMDVRNGSSGGLQI-------PLSQQTAATVCWERFLHVRTIRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVD 178          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 70/110 (63.64%), Postives = 82/110 (74.55%), Query Frame = 3
Query:  399 WERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            WERF+  +++KVLLV++DDSTR VVSALLR+C YEV    N   AW  LED+ N ID+VLTEV MP VSGI LL +IM H   KNIPV MMS  D+MG +FKCLSKGA D
Sbjct:   53 WERFIQKKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVD 162          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 70/110 (63.64%), Postives = 82/110 (74.55%), Query Frame = 3
Query:  399 WERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            WERF+  +++KVLLV++DDSTR VVSALLR+C YEV    N   AW  LED+ N ID+VLTEV MP VSGI LL +IM H   KNIPV MMS  D+MG +FKCLSKGA D
Sbjct:   53 WERFIQKKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVD 162          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.059e-30
Identity = 61/113 (53.98%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  390 VIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            +++WERFLP  +L+VLLVE DDSTR +++ALLR CSY V AV + L AW++L+     +D++LTEVD+P +SG  LL  IM H   KNIPV MMS +DS+  ++KC+ KGA D
Sbjct:   38 LVKWERFLPKIALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSTQDSVNTVYKCMLKGAAD 150          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 58/127 (45.67%), Postives = 90/127 (70.87%), Query Frame = 3
Query:  348 DGFXXXXXXXXXGSVIRWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            DG            V++WE++LP   L+VLLVE+D STR +++ALLR C Y+V AV++ L AW++L++ +++ID++LTE+D+P +SG  LL  +M H+  KNIPV MMS +DS+ ++ KC+ +GA D
Sbjct:   11 DGMETIKNRVKSSEVVQWEKYLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAAD 137          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  396 RWERFLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            R  R LP   ++VLL E DDSTRH++ ALLR C Y V A ++ + AW IL++ + +ID+VLTEV++P++SG  LL  IM H   KNIPV MMS  DS+ ++FKC+ KGA D
Sbjct:   33 RETRMLPRMPVRVLLAEGDDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAAD 143          
BLAST of FC924934 vs. ExPASy Swiss-Prot
Match: APRR1_ARATH (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  408 FLPTRSLKVLLVENDDSTRHVVSALLRNCSYEVTAVANSLHAWKILEDLTNHIDIVLTEVDMPVVSGIGLLCKIMTHKTLKNIPVKMMSPKDSMGILFKCLSKGAGD 728
            F+    +++LL +ND ++   V  LL  CSY+VTAV ++      L      IDI+L E+D+P+  G+ +L  I   K L+ IPV MMS +D + ++ KCL  GA D
Sbjct:   13 FIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAAD 119          
The following BLAST results are available for this feature:
BLAST of FC924934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APRR3_ARATH9.177e-4858.96Two-component response regulator-like APRR3 OS=Ara... [more]
PRR73_ORYSI7.525e-4254.71Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSJ2.189e-4154.12Two-component response regulator-like PRR73 OS=Ory... [more]
APRR7_ARATH2.859e-4156.00Two-component response regulator-like APRR7 OS=Ara... [more]
PRR37_ORYSJ8.339e-3363.64Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSI8.339e-3363.64Two-component response regulator-like PRR37 OS=Ory... [more]
APRR5_ARATH5.059e-3053.98Two-component response regulator-like APRR5 OS=Ara... [more]
APRR9_ARATH1.922e-2945.67Two-component response regulator-like APRR9 OS=Ara... [more]
PRR95_ORYSJ8.930e-2752.25Two-component response regulator-like PRR95 OS=Ory... [more]
APRR1_ARATH6.638e-1438.32Two-component response regulator-like APRR1 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM13FM1 TF Citrus clementina cDNA clone KN0AAP1YM13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924934 ID=FC924934; Name=FC924934; organism=Citrus clementina; type=EST; length=730bp
TCAAGAGAAAGGGGGAAAAAAAAAAAATAGAGTTCCTAATAATTAAGATT
TGATAAATGGTGGCTTGATCTTATTCTCTGGATAAAGAGTGAAGAGTTTG
GTTCTGTGGACAACATAAAATACAAACATGGTAGATTGAACAAAGGGTAT
CCTGTACTGTTTTTATTGAATTTGGTTTATATAGTGGGCTGGTAATCCTA
AACGGCAGTATGTGTTATGAGCAAAAGGAAGTTGGGAATGGAGTGGCTGG
TGAGGGTCATGGTCTGGGCTCATCAGAGGAAGATGAGTCAAGGGTTGACG
ATGCTGTTAACTCAAACAATGGGCCTGGTGGAACAATTCAGGTCCATGAT
GGTTTCCAGATATCACAACAACAACAACCTCAAGGTTCTGTGATACGTTG
GGAGAGGTTTCTGCCTACTAGGTCGTTGAAGGTTCTTCTAGTGGAAAATG
ATGATTCAACTCGCCATGTTGTCAGCGCTCTGCTGCGGAATTGCAGTTAT
GAAGTTACTGCTGTTGCAAACAGCCTTCATGCATGGAAGATTCTTGAAGA
TCTTACTAATCATATTGATATTGTTCTAACGGAGGTAGACATGCCTGTTG
TATCAGGAATTGGTCTTTTATGCAAAATTATGACGCATAAAACTCTAAAA
AACATTCCAGTGAAAATGATGTCACCTAAAGATTCTATGGGCATACTCTT
TAAGTGTTTATCAAAAGGTGCGGGCGATTT
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