FC924942

Overview
NameFC924942
Unique NameFC924942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:453..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 3.489e-93
Identity = 170/190 (89.47%), Postives = 182/190 (95.79%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIVAE+ DKFRVVALAAGSN+TLLADQVK FKP++VAVRNESL+DE+KEALA+ + KPEI+ GEQGVIE ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA KH +KILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPV+KLKEVKVADALKHPNW+MG
Sbjct:   91 QTLDIVAENPDKFRVVALAAGSNVTLLADQVKTFKPKLVAVRNESLVDELKEALADCDWKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAQKHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVDKLKEVKVADALKHPNWNMG 280
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 2.262e-92
Identity = 168/190 (88.42%), Postives = 184/190 (96.84%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIVAE+ DKFRVVALAAGSN+TLLADQV+RFKP +VAVRNESL++E+KEALA+++ K EI+ GEQGVIE ARHP+AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA+KHN+KILPADSEHSAIFQCIQGLPEGALR+IILTASGGAFRDWPVEKLKEVKVADALKHPNW+MG
Sbjct:   95 QTLDIVAENPDKFRVVALAAGSNVTLLADQVRRFKPALVAVRNESLINELKEALADLDYKLEIIPGEQGVIEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLANKHNVKILPADSEHSAIFQCIQGLPEGALRKIILTASGGAFRDWPVEKLKEVKVADALKHPNWNMG 284
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.117e-90
Identity = 165/190 (86.84%), Postives = 180/190 (94.74%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIVAE+ DKFR+VALAAGSN+TLLADQVK FKP++V+V++ESL+ E+KEALA  E+ PEI+ GEQG+IE ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA KHN+KILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRD PVEKLKEVKVADALKHPNW+MG
Sbjct:   89 QTLDIVAENPDKFRIVALAAGSNVTLLADQVKAFKPKLVSVKDESLISELKEALAGFEDMPEIIPGEQGMIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDLPVEKLKEVKVADALKHPNWNMG 278
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_ACAM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acaryochloris marina (strain MBIC 11017) GN=dxr PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.272e-76
Identity = 134/190 (70.53%), Postives = 167/190 (87.89%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIVA++ D+FR+V +AAG NI LL+ Q+++F+P++VA+ + + L ++K+A+A+V+ +P++LAGE GV+E A + DA +VVTGIVGCAGL PT+AAI+AGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+PEG LRRIILTASGGAFRDWPVEKL EV VADALKHPNWSMG
Sbjct:   16 QTLDIVAQYPDQFRIVGMAAGRNIELLSQQIRQFRPEIVAIADPNQLSDLKDAIADVDPQPQLLAGEAGVVEVAAYGDAESVVTGIVGCAGLLPTIAAIKAGKDIALANKETLIAGGPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPEGGLRRIILTASGGAFRDWPVEKLPEVTVADALKHPNWSMG 205
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_CYAA5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain ATCC 51142) GN=dxr PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 7.310e-75
Identity = 137/190 (72.11%), Postives = 163/190 (85.79%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIV ++ D+F+VV LA  SN+ LLA QV++F+P++VA+ +ES L  +K+A+A+++  P ILAGEQGV E ARH DA +VVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P+G LRRIILTASGGAFRDWPVE+LK V V DALKHPNWSMG
Sbjct:   16 QTLDIVNQYPDQFQVVGLATRSNVELLATQVQQFRPEIVAICDESKLGSLKDAIASMDYSPLILAGEQGVAEVARHGDAESVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVLPLIEKHGVKLLPADSEHSAIFQCLQGVPDGGLRRIILTASGGAFRDWPVEQLKYVTVQDALKHPNWSMG 205
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_MICAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Microcystis aeruginosa (strain NIES-843) GN=dxr PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 6.188e-74
Identity = 132/190 (69.47%), Postives = 164/190 (86.32%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIV +H DKF+VV LA G+NI LL++Q+++F+PQ+VA+ NES L+++K  +++++  P ILAG++GVIE AR+ D+ +VVTGIVGCAGL PT+AAI AGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P G L++IILTASGGAFRD PVEKL +V VADALKHPNWSMG
Sbjct:   16 QTLDIVTDHPDKFQVVGLATGNNIQLLSEQIRQFRPQIVAINNESQLEDLKSLISDLDYTPIILAGKEGVIEVARYGDSESVVTGIVGCAGLLPTIAAITAGKDIALANKETLIAGGPVVLPLVEKHRVKLLPADSEHSAIFQCLQGVPTGGLKKIILTASGGAFRDLPVEKLPQVTVADALKHPNWSMG 205
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_ANAVT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.167e-72
Identity = 129/190 (67.89%), Postives = 161/190 (84.74%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIV+++ D+FR+V LAAGSN+ +LA+Q+++F+PQ+ A+     L  ++ A+ +++ +P +L GE GVIE AR+ DA TVVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P+G LR+I+LTASGGAFRDW VE+L EV VADALKHPNWSMG
Sbjct:   16 QTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQIAAISAAEKLPALQAAIKDLDPQPILLGGEAGVIEVARYGDAETVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPKGGLRKILLTASGGAFRDWDVERLAEVTVADALKHPNWSMG 205
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_CYAP8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 8801) GN=dxr PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.395e-72
Identity = 131/190 (68.95%), Postives = 161/190 (84.74%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIV ++ D+F+VV LA  +N  LLA Q+K+F+P++VA+  ES L+ IK+A+A+++  P +L GE GV+E AR+ D+ +VVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P+G LRRIILTASGGAFRDWPVE+LK V V DA+KHPNWSMG
Sbjct:   16 QTLDIVQQYPDQFQVVGLATRNNGELLAQQIKQFRPEIVAICQESQLNTIKDAIASLDYSPILLTGEAGVVEVARYGDSESVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPKGGLRRIILTASGGAFRDWPVEQLKFVTVEDAIKHPNWSMG 205
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_NOSP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxr PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 5.792e-72
Identity = 128/190 (67.37%), Postives = 161/190 (84.74%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIV ++ D+FR+V LAAG+N+ +LA Q+++F+P++ A+ +E  L  +KEA+ +++ +P +LAGE GVIE AR+ DA TVVTGIVGCAGL PT+AAIEAGKDIALANKETLIAG P VLPL  KH +K+LPADSEHSAIFQC+QG+P+  LR+I+LTASGGAFRDW VE+L +V VADALKHPNWSMG
Sbjct:   16 QTLDIVTQYPDQFRIVGLAAGNNVEMLAAQIRQFRPKIAAICSEDKLPALKEAIIDLDPQPILLAGEAGVIEVARYGDAQTVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGAPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPKSGLRKILLTASGGAFRDWDVERLADVTVADALKHPNWSMG 205
[Close]
BLAST of FC924942 vs. ExPASy Swiss-Prot
Match: DXR_ANASP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena sp. (strain PCC 7120) GN=dxr PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 5.792e-72
Identity = 127/190 (66.84%), Postives = 161/190 (84.74%), Query Frame = 3 
Query:    3 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG 572
            QTLDIV+++ D+FR+V LAAGSN+ +LA+Q+++F+PQ+ A+     L  ++ A+ +++ +P +L GE GVIE AR+ DA TVVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+QG+P+G L++I+LTASGGAFRDW VE+L EV V+DALKHPNWSMG
Sbjct:   17 QTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQIAAISAAEKLPALQAAIKDLDPQPILLGGEAGVIEVARYGDAETVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVLPLVEKHGVKLLPADSEHSAIFQCLQGVPKGGLKKILLTASGGAFRDWDVERLAEVTVSDALKHPNWSMG 206
The following BLAST results are available for this feature:
BLAST of FC924942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_ORYSJ3.489e-9389.471-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ARATH2.262e-9288.421-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI2.117e-9086.841-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ACAM12.272e-7670.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAA57.310e-7572.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MICAN6.188e-7469.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAVT1.167e-7267.891-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP83.395e-7268.951-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NOSP75.792e-7267.371-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASP5.792e-7266.841-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YM24FM1 TF Citrus clementina cDNA clone KN0AAP1YM24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924942 ID=FC924942; Name=FC924942; organism=Citrus clementina; type=EST; length=574bp
CTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTG
GCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAG
ATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAA
TCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGG
GAACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCGGTCACCGTGGT
GACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAG
AAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGT
GGTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCC
AGCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAAGGCTTGCCTG
AGGGTGCACTTCGGCGCATTATTTTAACTGCATCTGGTGGGGCTTTCAGG
GACTGGCCGGTTGAGAAACTGAAAGAAGTTAAAGTGGCTGATGCATTGAA
GCATCCTAACTGGAGTATGGGAAA
back to top