FC924951

Overview
NameFC924951
Unique NameFC924951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2473 contig Ccv1_Contig2473:37..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_NEMVE (Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.238e-43
Identity = 78/179 (43.58%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   52 YEDAPADYDGSADARASSQDLGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            YED  + Y G  D    S +       VP+ +K F+   ++H+ E+N+YEI  +YE  F  L+DR F  TPWP  + +A  V  D VF +LY+E+++RH+Y +L PT++QR +S+ NYC LF  +L+    V + LPNQWLWD++DEF+YQFQ+F Q+R+K++NK E EI +LR   ++
Sbjct:   15 YEDDYSGYQGDGDDSVGSYN-------VPEEIKRFIHFFHQHVLEQNLYEIQSIYENGFNKLTDRYFNKTPWPEAEFIAPLVSGDQVFLILYKELYYRHIYNKLKPTVEQRFESYYNYCDLFNYILNTDEPVPLTLPNQWLWDIIDEFIYQFQAFSQFRSKLQNKPEDEIDVLRANSKI 186          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_XENLA (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus laevis GN=eif3l PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.152e-40
Identity = 83/212 (39.15%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   40 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            +SYD     ADYDG        QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+ PWP  +A+A  V ND VF +LY+E+++RH+YA+++  PTL+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   ++
Sbjct:   10 SSYDPYSYQADYDGHTGD--PKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDLIDQKVYEIQDIYENSWAKLTERFFKNAPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVTGGPTLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIEFLRSNPKI 219          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_PANTR (Eukaryotic translation initiation factor 3 subunit L OS=Pan troglodytes GN=EIF3L PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40
Identity = 83/212 (39.15%), Postives = 129/212 (60.85%), Query Frame = 1
Query:   40 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            A+YD    P+DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  +A+A  V ND VF +LY+E+++RH+YA++S  P+L+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   ++
Sbjct:   12 AAYDPYAYPSDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKI 221          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_HUMAN (Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.964e-40
Identity = 83/212 (39.15%), Postives = 129/212 (60.85%), Query Frame = 1
Query:   40 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            A+YD    P+DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  +A+A  V ND VF +LY+E+++RH+YA++S  P+L+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   ++
Sbjct:   12 AAYDPYAYPSDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKI 221          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_XENTR (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus tropicalis GN=eif3l PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.351e-40
Identity = 83/211 (39.34%), Postives = 128/211 (60.66%), Query Frame = 1
Query:   43 SYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            SYD  +  ADYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK++PWP  +A+A  V ND VF +LY+E+++RH+YA++S  PTL+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   ++
Sbjct:   11 SYDPYNYQADYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNSPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPTLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIEFLRSNPKI 219          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_DANRE (Eukaryotic translation initiation factor 3 subunit L OS=Danio rerio GN=eif3l PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.376e-40
Identity = 85/213 (39.91%), Postives = 128/213 (60.09%), Query Frame = 1
Query:   43 SYDYEDAPADYD-GSADARASSQDLGYDPNF--------VPDSVKSFVVHLYRHIR--------------------EKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            +YD    P DYD  + D +A   DL Y+  +        +P+ +K+F+ + ++ I                     E+ +YEI  +YE S+  L+DR FK +PWP  +A+A  V ND VF +LY+E+++RH+YA++S  PTL QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   ++
Sbjct:   11 NYDPYSYPNDYDYHTGDPKA---DLAYERQYEHQQTYHVIPEVIKNFLQYFHKTISDLIDQKVYELQANRVSSESIEQKIYEIQDVYENSWNKLTDRFFKTSPWPEAEAIASLVGNDAVFLILYKELYYRHIYAKVSGGPTLDQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIEFLRNNPKI 220          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_BOVIN (Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus GN=EIF3L PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.464e-40
Identity = 82/212 (38.68%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   40 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            A+YD    P DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  + +A  V ND VF +LY+E+++RH+YA++S  P+L+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   ++
Sbjct:   12 AAYDPYAYPGDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKI 221          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_MOUSE (Eukaryotic translation initiation factor 3 subunit L OS=Mus musculus GN=Eif3l PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 83/212 (39.15%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   40 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            A+YD    P DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  +A+A  V ND VF +LY+E+++RH+YA++S  P+L+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E E+  LR   +V
Sbjct:   12 AAYDPYAYPGDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEGEMDFLRSNPKV 221          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_CHICK (Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus GN=EIF3L PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 83/212 (39.15%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   40 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQV 582
            A+YD      DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  +A+A  V ND VF +LY+E+++RH+YA++S  PTL+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   ++
Sbjct:   12 AAYDPYAYSNDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPTLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKI 221          
BLAST of FC924951 vs. ExPASy Swiss-Prot
Match: EIF3L_DROYA (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila yakuba GN=GE20146 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.401e-38
Identity = 77/180 (42.78%), Postives = 118/180 (65.56%), Query Frame = 1
Query:   49 DYEDAPADYDGSADARASSQDLGYDPNF----VPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVL--HGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALL 564
            +Y +    YD  A       D+ Y+ N+    +PD+VK F+++  + I+E N+Y+I  MYE +F  +SD  F  T WP    VA  VDND VF +LY+E+++RH++AR+S  P L+QRI+S+ NYC  F +++     V ++LP+ WLW++VDEFVYQFQ+F QYRA++ +K++ EI  L
Sbjct:    6 EYANNSEYYDDYAHTGDPQLDMEYERNYYAARMPDNVKYFLINFCQAIKEGNLYDIQNMYENTFPQISDHHFDKTAWPEEQEVAAIVDNDKVFLILYKELYYRHIHARISGGPKLEQRINSFFNYCDFFNLIISAQNPVMLELPDIWLWELVDEFVYQFQNFAQYRARLTDKSQDEIQQL 185          
The following BLAST results are available for this feature:
BLAST of FC924951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
EIF3L_NEMVE3.238e-4343.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_XENLA1.152e-4039.15Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_PANTR1.964e-4039.15Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_HUMAN1.964e-4039.15Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_XENTR3.351e-4039.34Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DANRE4.376e-4039.91Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_BOVIN7.464e-4038.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_MOUSE1.273e-3939.15Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CHICK1.273e-3939.15Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROYA2.401e-3842.78Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO09FM1 TF Citrus clementina cDNA clone KN0AAP6YO09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924951 ID=FC924951; Name=FC924951; organism=Citrus clementina; type=EST; length=645bp
CACGAATTAAACTTTGATCTATAAGCAATAATGGCGGCGGCTAGTTACGA
TTACGAAGACGCTCCGGCCGATTACGATGGTTCAGCGGATGCGCGCGCTT
CATCCCAAGACCTAGGCTACGACCCTAACTTCGTGCCTGACTCCGTAAAG
TCATTCGTTGTTCATCTTTACCGCCACATTCGCGAGAAGAATGTCTACGA
GATCCACCAGATGTACGAGACGTCGTTTCAGAGTCTCTCCGACCGCCTCT
TCAAGGATACTCCCTGGCCATCCGTTGACGCCGTCGCTCATTATGTTGAC
AATGATCATGTTTTCTGTCTTCTCTATCGCGAGATGTGGTTCCGCCACTT
GTACGCTAGATTGTCGCCTACTCTCAAGCAGAGGATTGATTCTTGGGACA
ATTATTGTAGCCTGTTTCAGGTGGTGCTGCATGGAGTGGTGAATATGCAG
TTGCCAAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTTTACCAGTT
CCAGAGTTTCTGTCAGTACAGAGCCAAGATGAAGAACAAGACAGAGCAGG
AGATTGCACTTTTGAGGCAGTATGATCAGGTTTTGTAATGGTTTCATCCC
TGTTCTTCTCTTTGGTTGCCATTATGGAATGATTTGAGACGGTGA
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