FC924954

Overview
NameFC924954
Unique NameFC924954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14879 contig Ccv1_Contig14879:76..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MA   LTRVHSLRERLDETLSA+RNEILALLSRIEGKGKGILQ+HQ+IAEFE I EE+R+ LT+GAFGEVLR+ QEAIVLPPWVALAVRPRPGVWEY+R+NV AL
Sbjct:    1 MATDRLTRVHSLRERLDETLSANRNEILALLSRIEGKGKGILQHHQVIAEFEEIPEESRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHAL 105          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.352e-43
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MA   LTRVHSLRERLDETL+A+RNEILALLSRIE KGKGILQ+HQ+IAEFE I EENR+ LT+GAFGEVLR+ QEAIVLPPWVALAVRPRPGVWEY+R+NV AL
Sbjct:    1 MATERLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQVIAEFEEIPEENRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHAL 105          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.423e-43
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MA   LTRVHSLRERLDETL+A+RNEILALLSRIE KGKGILQ+HQ+IAEFE I EENR+ LT+GAFGEVLR+ QEAIVLPPWVALAVRPRPGVWEY+R+NV AL
Sbjct:    1 MATDRLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQVIAEFEEIPEENRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHAL 105          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 83/105 (79.05%), Postives = 96/105 (91.43%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MA   LTRVHSL+ERLDETL+A+RNEILALLSR+E KGKGILQ+HQ+IAEFE I EE+R+ LT+GAFGEVLR+ QEAIVLPPWVALAVRPRPG+WEY+R+NV AL
Sbjct:    1 MATERLTRVHSLKERLDETLTANRNEILALLSRLEAKGKGILQHHQVIAEFEEIPEESRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGIWEYLRVNVHAL 105          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.388e-41
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MAER LTRVHSLRERLDETL A+RNEI+ALLSRI GKGKGI +NHQLIAE E+I E  RK L +GAFGEVLR+ QEAIVLPPWVALAVRPRPGVWEYIR+NV AL
Sbjct:    1 MAERVLTRVHSLRERLDETLVANRNEIVALLSRIIGKGKGICRNHQLIAEVEAIPEATRKKLLDGAFGEVLRSAQEAIVLPPWVALAVRPRPGVWEYIRVNVHAL 105          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUS2_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.660e-37
Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MAER LTRVHSLRERLD TL+AHRNEIL  LSRIE  GKGIL+ HQL+AEFESI +E++  L + AF EVL++ QEAIVLPPWVALA+R RPGVWEY+R+NV AL
Sbjct:    1 MAERVLTRVHSLRERLDATLAAHRNEILLFLSRIESHGKGILKPHQLLAEFESIHKEDKDKLNDHAFEEVLKSTQEAIVLPPWVALAIRLRPGVWEYVRVNVNAL 105          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.148e-35
Identity = 73/105 (69.52%), Postives = 89/105 (84.76%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MAER LTRVHSLRER+D TL+AHRNEIL  LSRIE  GKGIL+ H+L+AEF++I ++++  L E AF E+L++ QEAIVLPPWVALA+R RPGVWEYIR+NV AL
Sbjct:    1 MAERVLTRVHSLRERVDATLAAHRNEILLFLSRIESHGKGILKPHELLAEFDAIRQDDKNKLNEHAFEELLKSTQEAIVLPPWVALAIRLRPGVWEYIRVNVNAL 105          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.499e-35
Identity = 72/104 (69.23%), Postives = 89/104 (85.58%), Query Frame = 1
Query:  343 AERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            AER +TRVHS RERL+ETL + RNE+LALLSR+E KGKGILQ +Q+IAEFE++ E+ RK L  G F ++L++ QEAIVLPPWVALAVRPRPGVWEY+R+N+ AL
Sbjct:    4 AERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHAL 107          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 71/105 (67.62%), Postives = 87/105 (82.86%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MAER LTRVH LRER+D TL AHRNEIL  LSRIE  GKGIL+ H+L+AEF++I ++++  L E AF E+L++ QEAIVLPPWVALA+R RPGVWEY+R+NV AL
Sbjct:    1 MAERVLTRVHRLRERVDATLCAHRNEILLFLSRIESHGKGILKPHELLAEFDAIRQDDKDKLNEHAFEELLKSTQEAIVLPPWVALAIRLRPGVWEYVRVNVNAL 105          
BLAST of FC924954 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 67/106 (63.21%), Postives = 88/106 (83.02%), Query Frame = 1
Query:  340 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRAPQEAIVLPPWVALAVRPRPGVWEYIRMNVPAL 654
            MA+RA+TRVHS+RERL +TLSAH+NE+LAL SR   +G+G+LQ HQL+ E+E+ I   +R+ L +G F +VL+A QEAIV+PPWVALA+RPRPGVWEY+R+NV  L
Sbjct:    1 MADRAMTRVHSVRERLTDTLSAHKNELLALFSRFVKQGQGMLQPHQLLTEYEAVIPAADREKLKDGVFEDVLKAAQEAIVIPPWVALAIRPRPGVWEYVRVNVSEL 106          
The following BLAST results are available for this feature:
BLAST of FC924954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUSY_PHAAU2.551e-4383.81Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUSY_VICFA4.352e-4382.86Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUSY_SOYBN7.423e-4382.86Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUSY_MEDSA8.207e-4279.05Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUSY_ALNGL2.388e-4181.90Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUS2_SOLTU4.660e-3773.33Sucrose synthase OS=Solanum tuberosum PE=3 SV=1[more]
SUS1_SOLTU1.148e-3569.52Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUS1_ARATH1.499e-3569.23Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUSY_SOLLC1.269e-3467.62Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUS2_TULGE9.095e-3363.21Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YO12FM1 TF Citrus clementina cDNA clone KN0AAP6YO12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924954 ID=FC924954; Name=FC924954; organism=Citrus clementina; type=EST; length=656bp
TTCTTCTTCCTTTCCTTTAGTTTTGAATTCTTCTTCCAGGTCGAGGATCG
TGTTCAATGCTCTAGTCTATCCTGTTGAATTACTTGTTCATATTTTACGC
TGATTTTTTTGACCACCTCTAGAAACTCAGCCTTAAAAAGAAGCTCCTCA
GTTTCACTGTTGCCTTTGCTAGAATTTTCTCCCATGCTTTTGTTGGTGGA
ATACTAAAAAGAAAAAGGATAAAGAAAAAAGAAAAGCTTTGATCCAAAAT
TTATCCCTGGTAGCCACACAAAGTGGTAGTTCAATTATTATGCCTACGCT
TTAAAGATTTTGTTGAAGTTTTTGTTTGTCTGAGAATCAATGGCCGAACG
TGCTTTGACCCGCGTTCACAGTCTCCGCGAGCGTTTGGATGAGACTCTCT
CTGCCCACAGGAATGAAATCTTGGCCCTTTTGTCAAGGATTGAGGGCAAG
GGCAAAGGAATCTTGCAAAACCATCAACTTATTGCTGAGTTTGAATCAAT
TTCTGAGGAAAACAGAAAGCATCTAACTGAGGGTGCATTTGGTGAAGTTC
TAAGAGCCCCCCAGGAAGCAATTGTTTTGCCTCCGTGGGTAGCGCTTGCC
GTGCGTCCCAGGCCCGGTGTGTGGGAGTACATCCGAATGAATGTCCCTGC
CCTTGT
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