FC924960

Overview
NameFC924960
Unique NameFC924960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC924960_ssr56 microsatellite FC924960_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12975 contig Ccv1_Contig12975:45..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924960 vs. ExPASy Swiss-Prot
Match: C77A3_SOYBN (Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.373e-51
Identity = 103/153 (67.32%), Postives = 121/153 (79.08%), Query Frame = 3
Query:   84 HLFFTFLAFLLSGLIFFLASRKTKSKRXXXXXXXXXXXXXXXXFQVARSGKPFFKYVDDLLPIYGPIFTLRMGTRTMIILSDAKLVHEALIEKGSLFATRPRENPTRTIFSCNKFTVNAALYGPVWRSLRRNMVQNMLSSSRIREFREVRNKA 542
            H  FT LAF +SGLIFFL  +K+KSK+                FQVARSGKPFF+YV+D+   YG IFTL+MGTRTMIIL+DAKLVHEA+I+KG+ +ATRP ENPTRTIFS NKFTVNAA YGPVW+SLRRNMVQNMLSS+R++EFR VR+ A
Sbjct:    9 HFIFTALAFFISGLIFFL-KQKSKSKKFNLPPGPPGWPIVGNLFQVARSGKPFFEYVNDVRLKYGSIFTLKMGTRTMIILTDAKLVHEAMIQKGATYATRPPENPTRTIFSENKFTVNAATYGPVWKSLRRNMVQNMLSSTRLKEFRSVRDNA 160          
BLAST of FC924960 vs. ExPASy Swiss-Prot
Match: C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.282e-50
Identity = 103/162 (63.58%), Postives = 124/162 (76.54%), Query Frame = 3
Query:   57 SSSSMAVAIHLFFTFLAFLLSGLIFFLASRKTKSKRXXXXXXXXXXXXXXXXFQVARSGKPFFKYVDDLLPIYGPIFTLRMGTRTMIILSDAKLVHEALIEKGSLFATRPRENPTRTIFSCNKFTVNAALYGPVWRSLRRNMVQNMLSSSRIREFREVRNKA 542
            S+SS++   HL FT LAF++S +I+FL S+K +SK+                 QVARSGKPFF+ + +L   YGPIFTLRMGTRTMIILS+A LVHEALI KG +FATRPRENPTRT+FSC+KFTVNAA+YGPVWRSLR+NMVQN LSS R++EFR VR  A
Sbjct:    5 STSSLSSYYHLIFTILAFVISSIIYFL-SKKAESKKLKLPPGPPGWPVVGNLLQVARSGKPFFQIMRELRQKYGPIFTLRMGTRTMIILSNADLVHEALILKGQVFATRPRENPTRTVFSCDKFTVNAAVYGPVWRSLRKNMVQNGLSSIRLKEFRAVRKSA 165          
BLAST of FC924960 vs. ExPASy Swiss-Prot
Match: C77A1_SOLME (Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.501e-46
Identity = 96/149 (64.43%), Postives = 111/149 (74.50%), Query Frame = 3
Query:   99 FLAF-LLSGLIFFLASRKTKSKRXXXXXXXXXXXXXXXXFQVARSGKPFFKYVDDLLPIYGPIFTLRMGTRTMIILSDAKLVHEALIEKGSLFATRPRENPTRTIFSCNKFTVNAALYGPVWRSLRRNMVQNMLSSSRIREFREVRNKA 542
            F AF LL  L  FL +RK KSK                 FQVA SGK FF+Y+ DL P YG IFTL+MG+RTMII++ A+L HEALI+KG +FA+RPRENPTRTIFSCNKF+VNAA+YGPVWRSLRRNMVQNMLS SR++EFRE R  A
Sbjct:    2 FTAFSLLFSLFIFLLTRKPKSKTPNLPPGPPGWPIVGNLFQVAGSGKQFFEYIRDLKPKYGSIFTLKMGSRTMIIVASAELAHEALIQKGQIFASRPRENPTRTIFSCNKFSVNAAVYGPVWRSLRRNMVQNMLSPSRLKEFREFREIA 150          
The following BLAST results are available for this feature:
BLAST of FC924960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C77A3_SOYBN3.373e-5167.32Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=... [more]
C77A2_SOLME1.282e-5063.58Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77... [more]
C77A1_SOLME2.501e-4664.43Cytochrome P450 77A1 (Fragment) OS=Solanum melonge... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YO16FM1 TF Citrus clementina cDNA clone KN0AAP6YO16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924960 ID=FC924960; Name=FC924960; organism=Citrus clementina; type=EST; length=583bp
CTCTCTCTTCACATCATCTAGCTCTTCTCTAGCAGCAACTCTTTTCACCT
CATCTATCATCATCATCAATGGCAGTGGCGATTCATCTCTTCTTCACTTT
CCTAGCTTTTCTTCTTTCAGGGTTAATTTTCTTTCTAGCTTCCCGGAAAA
CAAAATCAAAACGTCCGAATCTTCCTCCAGGCCCTCCGGGCTGGCCAGTT
GTTGGCAATCTCTTCCAAGTAGCTCGCTCCGGCAAGCCTTTCTTCAAATA
CGTCGATGATCTTCTCCCAATATACGGTCCGATTTTCACCCTCAGGATGG
GAACAAGAACCATGATCATCCTGAGCGACGCCAAGCTAGTCCACGAAGCC
CTCATCGAAAAGGGTAGTCTCTTCGCCACTCGCCCTAGAGAAAACCCTAC
CAGAACCATCTTCAGCTGCAACAAGTTCACCGTCAACGCCGCCCTTTACG
GGCCCGTCTGGCGGTCCCTGCGAAGAAACATGGTGCAGAACATGCTCAGT
TCAAGCAGAATTAGGGAGTTCCGTGAAGTCAGAAACAAGGCAAATGGATA
AATTAATCAACAGGCTCAAAGCTGAAGCCGAAG
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