FC924961

Overview
NameFC924961
Unique NameFC924961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14583 contig Ccv1_Contig14583:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP4E1_MOUSE (AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 65/135 (48.15%), Postives = 95/135 (70.37%), Query Frame = 1
Query:  280 LVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAGLPQV 684
            L++ +    SK EE++++  E+ +LK  +S P    + MKE ++RL+Y EMLG+DASFGYIHA+K+    NL+ KR GYLAV+LFL+E H+L++L+VNT+ KDL+S N + VC AL  V ++   E IPA LP +
Sbjct:   38 LIRGVTALSSKHEEEKLIQQELSSLKATVSAPTTTLKTMKECMVRLIYCEMLGYDASFGYIHAIKLAQQGNLLEKRVGYLAVSLFLHESHELLLLLVNTVVKDLQSTNLVEVCMALTVVSQIFPREMIPAVLPLI 172          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP4E1_HUMAN (AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 67/135 (49.63%), Postives = 95/135 (70.37%), Query Frame = 1
Query:  280 LVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAGLPQV 684
            LV+ I    SK EE++++  E+ +LK  +S P    + MKE ++RL+Y EMLG+DASFGYIHA+K+    NL+ KR GYLAV+LFL+E H+L++L+VNT+ KDL+S N + VC AL  V ++   E IPA LP +
Sbjct:   39 LVRGITALTSKHEEEKLIQQELSSLKATVSAPTTTLKMMKECMVRLIYCEMLGYDASFGYIHAIKLAQQGNLLEKRVGYLAVSLFLHESHELLLLLVNTVVKDLQSTNLVEVCMALTVVSQIFPCEMIPAVLPLI 173          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP4E_DICDI (AP-4 complex subunit epsilon OS=Dictyostelium discoideum GN=ap4e1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 71/140 (50.71%), Postives = 98/140 (70.00%), Query Frame = 1
Query:  268 EFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAGLPQVV 687
            +F DLVK+IGE+ S+ EE  I+ NEI  LK   S+    K K +E +IR++Y  MLG+D  FG+I A+ MT D  ++ KRTGYL ++L L E H+L+I+ VN+I K L S NYL VC+AL A+CKLI+ +TIPA L +V+
Sbjct:   33 DFYDLVKNIGESTSREEEVHIIQNEIIKLKSCFSKEQ-SKDKKRECLIRMIYCHMLGYDVPFGHIQALNMTQDSEILNKRTGYLTLSLCLPERHELLIMAVNSILKGLNSSNYLEVCSALTAMCKLIDNDTIPAFLQKVL 171          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP1G1_YEAST (AP-1 complex subunit gamma-1 OS=Saccharomyces cerevisiae GN=APL4 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 38/125 (30.40%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  283 VKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEE 657
            +K +  A++ A+E  I+  +   ++ ++ +  +P  K +  I +L+Y+ +LG    FG + ++ +   D+ V KR GYLA TL L+E  DL+ L+ N +  DL   N   V  AL ++  L + E
Sbjct:    9 IKDVRGAKTLADERAIITKQSAKIRTKLRDDHLPHEKRRVNIQKLLYLYILGEKTHFGQVESINLIASDDFVDKRLGYLAATLLLDESEDLLTLLTNMLNNDLHHPNKYAVSLALTSLGFLSSPE 133          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP1G1_SCHPO (AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe GN=apl4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 37/117 (31.62%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  283 VKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNA 633
            +K++  +++ AEE   +L E   +++ I +     R  ++ + +L+Y+ +LG    FG I  +K+      + KR GYLA  L L+E+ +++ L+ N++Q DLKS +  IV  AL+A
Sbjct:   37 IKAVRASKTTAEEHTTILKESAQIRKNIRQGSNDMRMRRKNVAKLLYLFLLGEPTHFGQIECLKLLSSSRFMDKRLGYLAAMLLLDENQEVLTLLTNSLQNDLKSRDKFIVGLALSA 153          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP2A2_DICDI (AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 36/128 (28.12%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  277 DLVKSIGEARSKAEEDRIVLNEIETLKRRISE-PDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEE 657
            + +  +  + SK  E++ V  E+  +++   E  +I   + ++Y+ +LVY+ MLG++  FG++ AV +        K+ GY+A+ + LNE H+++ LI+N+ ++DL + +      AL A+C +  +E
Sbjct:   20 NFISDLRNSPSKENEEKRVTKEMAHIRKEFKENKNIDGYQRRKYVCKLVYMYMLGYELDFGHMEAVTLLSSTKFSEKQIGYIALGILLNEQHEMLPLIINSFKEDLLARSDYFQSLALAAICNIGGKE 147          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP2A_SCHPO (AP-2 complex subunit alpha OS=Schizosaccharomyces pombe GN=apl3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 37/114 (32.46%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  316 EEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEE 657
            +E++ V  E+  ++ +     +     K+Y+ +L+Y+ MLG+  +FG++ A K+        K  GYLAV L LNE+H+L+ L++N+I+KDL S + L    AL+ +  +   E
Sbjct:   24 DEEKRVNVELAKIRAKFQSSTLSAYDRKKYVSKLLYIYMLGYPITFGHMEAAKLLSGTKYSEKLIGYLAVALLLNENHELMKLVINSIKKDLLSHDSLQNSLALHTIANIGGRE 137          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP2A1_MOUSE (AP-2 complex subunit alpha-1 OS=Mus musculus GN=Ap2a1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 37/139 (26.62%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  283 VKSIGEARSKAEEDRIVLNEIETLKRRIS-EPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINE---ETIPAGLPQVV 687
            +  I   +SK  E + +  E+  ++ +   +  +     K+Y+ +L+++ +LGHD  FG++ AV +   +    K+ GYL +++ +N + +LI LI N I+ DL S N   +C AL+ +  + +    E   A +P+++
Sbjct:   17 ISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMCLALHCIANVGSREMGEAFAADIPRIL 155          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP2A1_HUMAN (AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP2A1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 37/139 (26.62%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  283 VKSIGEARSKAEEDRIVLNEIETLKRRIS-EPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINE---ETIPAGLPQVV 687
            +  I   +SK  E + +  E+  ++ +   +  +     K+Y+ +L+++ +LGHD  FG++ AV +   +    K+ GYL +++ +N + +LI LI N I+ DL S N   +C AL+ +  + +    E   A +P+++
Sbjct:   17 ISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMCLALHCIANVGSREMGEAFAADIPRIL 155          
BLAST of FC924961 vs. ExPASy Swiss-Prot
Match: AP1G_DICDI (AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 39/145 (26.90%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  262 SKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNA---VCKLINEETIPAGLPQVV 687
            S +  DL+K++   ++ AEE   +  E   ++  + E D+  R+    + +L+Y+ MLG+   FG +  +K+    +   KR GYL + L L+E  ++++L  N I+ D+ + N  IV  +L A   +C       I   + +V+
Sbjct:    2 SSKLRDLIKTVRSCKTAAEERSQIAKESALIRTAMKEEDLESRQRN--VAKLLYIHMLGYPTQFGQMECLKLIVSPSYADKRIGYLGLMLLLDEKQEVLLLATNCIRGDIMNSNQFIVGVSLCAFGNICSTAMARDISPEIEKVI 144          
The following BLAST results are available for this feature:
BLAST of FC924961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AP4E1_MOUSE2.884e-3248.15AP-4 complex subunit epsilon-1 OS=Mus musculus GN=... [more]
AP4E1_HUMAN4.919e-3249.63AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=... [more]
AP4E_DICDI2.441e-3150.71AP-4 complex subunit epsilon OS=Dictyostelium disc... [more]
AP1G1_YEAST5.114e-1330.40AP-1 complex subunit gamma-1 OS=Saccharomyces cere... [more]
AP1G1_SCHPO5.114e-1331.62AP-1 complex subunit gamma-1 OS=Schizosaccharomyce... [more]
AP2A2_DICDI8.723e-1328.13AP-2 complex subunit alpha-2 OS=Dictyostelium disc... [more]
AP2A_SCHPO1.488e-1232.46AP-2 complex subunit alpha OS=Schizosaccharomyces ... [more]
AP2A1_MOUSE5.654e-1226.62AP-2 complex subunit alpha-1 OS=Mus musculus GN=Ap... [more]
AP2A1_HUMAN5.654e-1226.62AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP... [more]
AP1G_DICDI1.260e-1126.90AP-1 complex subunit gamma OS=Dictyostelium discoi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YN05FM1 TF Citrus clementina cDNA clone KN0AAP1YN05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924961 ID=FC924961; Name=FC924961; organism=Citrus clementina; type=EST; length=689bp
ACAGAAACCTCTCTCCACAATCACACAAATATTTCAGATCTAAATTCTTC
TTCCACGTACACTCAGCTCGACATCAGCACAATCAAAAGAAAACCCTCAT
TAGTCATTACACAATTCACTCCCACAAGAGCAACTAACTTTGAGTACTAT
TACTAATTTTGAAGCTGGAAAAATAATTGATCAAAGCAACAGGCAAAGCT
GGAGCAATTGAAGACAATAGGAAGGGAGCTCGCAATGGGCTCCCAAGGCG
GGTTCGGTCAATCAAAGGAGTTCCTCGACCTCGTCAAATCAATCGGCGAA
GCCCGATCCAAAGCCGAAGAAGACCGAATTGTCCTCAACGAGATCGAGAC
TCTCAAGCGCCGCATCTCCGAACCGGACATCCCCAAGCGCAAGATGAAAG
AGTATATCATTCGTCTCGTCTACGTCGAGATGCTCGGCCACGACGCCTCC
TTTGGCTACATCCACGCCGTCAAGATGACCCACGATGACAATTTGGTCCT
TAAACGAACTGGGTATTTGGCCGTCACTCTGTTCTTGAACGAGGATCATG
ATTTGATCATCTTGATTGTTAATACCATTCAGAAGGACCTCAAATCCGAT
AACTATTTGATCGTTTGCGCCGCGCTTAATGCTGTTTGTAAGTTGATTAA
TGAAGAGACCATCCCTGCGGGTTTGCCGCAGGTTGTTGA
back to top