FC924977

Overview
NameFC924977
Unique NameFC924977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1807 contig Ccv1_Contig1807:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.006e-31
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAK 485
            MEFWG+EVK+G+P+ V P    +IH+SQASLGE K +KG + VPL VK G++ LVLGTL  +NIPQL  DLVF+KEFELSH W  GS+YF GY+TP    + +     + +EEE+EE+P+  A     K   K  + K
Sbjct:    1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTP----NIEPQGYSEEEEEEEEEVPAGNAAKAVAKPKAKPAEVK 133          
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 66/138 (47.83%), Postives = 93/138 (67.39%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAK 485
            MEFWG+EVK G  +K +P +  ++HLSQA+LGESKK    D+  ++VK  D+KL +GTL  D  P + FDL+F+KEFELSH  K  S++F GY+   P +  DE D+   DE+E+  +P   AV ENGKA +K +K++
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVP---AVKENGKADEKKQKSQ 131          
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30
Identity = 69/136 (50.74%), Postives = 89/136 (65.44%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEK 479
            MEFWG+EVK G  +K +P    I+H+SQA+LGESKK    DS  ++VK  DKKL +GTL  D  PQ+ FDLVF KEFELSH  K  S++F GY+   P++  DE D+   DEEE+  +P    + ENGKA  K E+
Sbjct:    1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS---DSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIE-GDEMDLDSEDEEEELNIP---VIKENGKADGKEEQ 129          
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30
Identity = 65/138 (47.10%), Postives = 92/138 (66.67%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAK 485
            MEFWG+EVK G  +K +P +  ++HLSQA+LGESKK    D+  ++VK  D+KL +GTL  D  P + FDL+F+KEFELSH  K  S++F GY+   P +  DE D+   DE+E+  +P    V ENGKA +K +K++
Sbjct:    1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVP---VVKENGKADEKKQKSQ 131          
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.217e-28
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQK 470
            MEFWG EVK+G+PL V+P    ++HLSQASLGE KK+K  +SV L V    KKLVLGTL  + +PQ  FDLVF+++FELSHN K+GS+YF GY+   P +  +E D  D  +E  E++P    +A +GK   K
Sbjct:    1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKS-ESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFE--EEEDDEDDYDESDEDIP--LTLANSGKPEPK 128          
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPN--FDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAKV 488
            MEFWGVEVK GQ + V P    D+ IH+SQ +LGE+KK+K ++ V L++K G++K+VLGTL  D IP LS DLV + + ELSH  K+ S++FCGY+     D++ +F   DS EE++E         +NGK   KAE AKV
Sbjct:    1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDF--SDSSEEDEE---LALEGQDNGKPELKAEGAKV 136          
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 63/137 (45.99%), Postives = 81/137 (59.12%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKA 482
            MEFWGV V      KV P  D+++H+SQASL  + K    +SV L V  G  KLV+GTL  D  PQ+SFDLVF+KEFELSH+    +++F GY++P  ++  D     D D  E    P+ TAV  NG AG    KA
Sbjct:    1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSG--ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKSP-NIEQDDFTSSDDEDVPEAVPAPAPTAVTANGNAGAAVVKA 134          
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAKV 488
            MEFWGVEVK G+PL + P  D ++H+SQ +LGESK     + + L+V  G  KL++GTL  +  PQLS ++V E+ F LSH WKNGS++F GY+              D+ + E E+L      A   KA  K+   +V
Sbjct:    1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVT-EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV-------------DASDPEPEDLIDDQLEAAGFKAAPKSAAKQV 125          
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKK--LVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAEN 452
            MEFWG+E+K G+P KV      ++H SQ +LG+ +K K  ++  ++VK GD +   ++G L     PQ S DL    EFE+SHN    S+Y  GY+T    D  DE    DS+ +E  E   I A+ +N
Sbjct:    1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNL-SQKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRTFDAFDELDEEIDSDSELDEYME-QQIAALPQN 126          
The following BLAST results are available for this feature:
BLAST of FC924977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDT1_ARATH2.006e-3151.45Histone deacetylase HDT1 OS=Arabidopsis thaliana G... [more]
HDT3_MAIZE2.896e-3047.83Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 ... [more]
HDT2_MAIZE4.941e-3050.74Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 ... [more]
HDT1_MAIZE8.427e-3047.10Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 ... [more]
HDT1_SOLCH1.217e-2851.13Histone deacetylase HDT1 OS=Solanum chacoense GN=H... [more]
HDT1_SOYBN6.039e-2848.23Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE... [more]
HDT2_ARATH5.291e-2445.99Histone deacetylase HDT2 OS=Arabidopsis thaliana G... [more]
HDT3_ARATH3.429e-2341.01Histone deacetylase HDT3 OS=Arabidopsis thaliana G... [more]
HDT4_ARATH9.046e-1638.76Histone deacetylase HDT4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YN20FM1 TF Citrus clementina cDNA clone KN0AAP1YN20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924977 ID=FC924977; Name=FC924977; organism=Citrus clementina; type=EST; length=720bp
CTCGCTAAAACCCTAGCTTTCTCTATCTTACTCTCTTCACTCTAACACAC
GTATCCCGTCAGTTATCTTCGATGGAGTTTTGGGGTGTTGAAGTTAAGGC
TGGGCAGCCTCTTAAAGTGAAACCTAACTTTGACAATATCATCCATCTTT
CACAGGCATCACTTGGTGAGTCAAAGAAAGAGAAAGGACACGATTCTGTC
CCCCTCTTTGTGAAGTTTGGTGACAAGAAGCTTGTCCTTGGAACACTTAT
CCCTGATAATATCCCTCAATTATCTTTTGATCTAGTTTTTGAGAAAGAGT
TTGAGCTTTCTCACAACTGGAAGAACGGGAGTATCTACTTTTGTGGTTAC
CAGACCCCTTTGCCTATGGATAGTTCAGATGAATTTGATATGGGGGACTC
TGATGAAGAAGAGCAAGAGGAGCTTCCTTCCATTACTGCTGTAGCAGAGA
ACGGAAAAGCTGGGCAAAAGGCTGAGAAAGCAAAGGTGGCTACTCCCAAG
GCTAACCTGGCTGCTAAGCCTGCAAAGCCAATTAAGGATGTGAAACCTGA
AGAAGATGGTGACGATGAATCAGATGATTCAGATGATGAGATGGTTGATG
GAGATGATTCTGATGCGATTTCTGGTGAGGATGATTCTGACGATGACGAT
GAGGATGATTCAGAAGATGATGAAGACTCAGATGAAGATGAGGAGACACC
TAAGAAGCCTGAAGTAGGGA
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