FC924977
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT1_ARATH (Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.006e-31 Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAK 485 MEFWG+EVK+G+P+ V P +IH+SQASLGE K +KG + VPL VK G++ LVLGTL +NIPQL DLVF+KEFELSH W GS+YF GY+TP + + + +EEE+EE+P+ A K K + K Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKG-EFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTP----NIEPQGYSEEEEEEEEEVPAGNAAKAVAKPKAKPAEVK 133
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30 Identity = 66/138 (47.83%), Postives = 93/138 (67.39%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAK 485 MEFWG+EVK G +K +P + ++HLSQA+LGESKK D+ ++VK D+KL +GTL D P + FDL+F+KEFELSH K S++F GY+ P + DE D+ DE+E+ +P AV ENGKA +K +K++ Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVP---AVKENGKADEKKQKSQ 131
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.941e-30 Identity = 69/136 (50.74%), Postives = 89/136 (65.44%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEK 479 MEFWG+EVK G +K +P I+H+SQA+LGESKK DS ++VK DKKL +GTL D PQ+ FDLVF KEFELSH K S++F GY+ P++ DE D+ DEEE+ +P + ENGKA K E+ Sbjct: 1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS---DSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIE-GDEMDLDSEDEEEELNIP---VIKENGKADGKEEQ 129
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30 Identity = 65/138 (47.10%), Postives = 92/138 (66.67%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAK 485 MEFWG+EVK G +K +P + ++HLSQA+LGESKK D+ ++VK D+KL +GTL D P + FDL+F+KEFELSH K S++F GY+ P + DE D+ DE+E+ +P V ENGKA +K +K++ Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKS---DNALMYVKIDDQKLAIGTLSVDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE-EDEMDLDSEDEDEELNVP---VVKENGKADEKKQKSQ 131
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.217e-28 Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQK 470 MEFWG EVK+G+PL V+P ++HLSQASLGE KK+K +SV L V KKLVLGTL + +PQ FDLVF+++FELSHN K+GS+YF GY+ P + +E D D +E E++P +A +GK K Sbjct: 1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKS-ESVCLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFE--EEEDDEDDYDESDEDIP--LTLANSGKPEPK 128
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28 Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPN--FDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAKV 488 MEFWGVEVK GQ + V P D+ IH+SQ +LGE+KK+K ++ V L++K G++K+VLGTL D IP LS DLV + + ELSH K+ S++FCGY+ D++ +F DS EE++E +NGK KAE AKV Sbjct: 1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDF--SDSSEEDEE---LALEGQDNGKPELKAEGAKV 136
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24 Identity = 63/137 (45.99%), Postives = 81/137 (59.12%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKA 482 MEFWGV V KV P D+++H+SQASL + K +SV L V G KLV+GTL D PQ+SFDLVF+KEFELSH+ +++F GY++P ++ D D D E P+ TAV NG AG KA Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSG--ESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKSP-NIEQDDFTSSDDEDVPEAVPAPAPTAVTANGNAGAAVVKA 134
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23 Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKKLVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAENGKAGQKAEKAKV 488 MEFWGVEVK G+PL + P D ++H+SQ +LGESK + + L+V G KL++GTL + PQLS ++V E+ F LSH WKNGS++F GY+ D+ + E E+L A KA K+ +V Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVT-EPIQLYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV-------------DASDPEPEDLIDDQLEAAGFKAAPKSAAKQV 125
BLAST of FC924977 vs. ExPASy Swiss-Prot
Match: HDT4_ARATH (Histone deacetylase HDT4 OS=Arabidopsis thaliana GN=HDT4 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 3 Query: 72 MEFWGVEVKAGQPLKVKPNFDNIIHLSQASLGESKKEKGHDSVPLFVKFGDKK--LVLGTLIPDNIPQLSFDLVFEKEFELSHNWKNGSIYFCGYQTPLPMDSSDEFDMGDSDEEEQEELPSITAVAEN 452 MEFWG+E+K G+P KV ++H SQ +LG+ +K K ++ ++VK GD + ++G L PQ S DL EFE+SHN S+Y GY+T D DE DS+ +E E I A+ +N Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGNL-SQKFPQFSIDLYLGHEFEISHN-STSSVYLIGYRTFDAFDELDEEIDSDSELDEYME-QQIAALPQN 126 The following BLAST results are available for this feature:
BLAST of FC924977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC924977 ID=FC924977; Name=FC924977; organism=Citrus clementina; type=EST; length=720bpback to top |