FC924982

Overview
NameFC924982
Unique NameFC924982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC924982_ssr318 microsatellite FC924982_ssr318:318..332. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15079 contig Ccv1_Contig15079:22..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC924982 vs. ExPASy Swiss-Prot
Match: EDS5_ARATH (Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.308e-54
Identity = 99/128 (77.34%), Postives = 113/128 (88.28%), Query Frame = 3 
Query:  351 RGGLEKQSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNV 734
            RG L KQSIW QMKEIV FTGPA G+W+CGPLMSLIDT VIGQGSS+ELAALGPGTV+CD+++YVFMFLS+ATSNMVATSLA+QDK E QHQISVLLF+GL CG +MLL TR FG WA+TAFT  +N+
Sbjct:   87 RGDLVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMSYVFMFLSVATSNMVATSLAKQDKKEAQHQISVLLFIGLVCGLMMLLLTRLFGPWAVTAFTRGKNI 214
The following BLAST results are available for this feature:
BLAST of FC924982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EDS5_ARATH2.308e-5477.34Enhanced disease susceptibility 5 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YA02FM1 TF Citrus clementina cDNA clone KN0AAP8YA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924982 ID=FC924982; Name=FC924982; organism=Citrus clementina; type=EST; length=737bp
CCTTCCCTCTTTCAAGTTTTGGTTTTGTACTAAAAAAAGTGAAAAAAAAA
AAACACTTAAAAATTCAAGAAAAAATGCAAATCAAAACCCTAATTCACCC
ATTGCAGGGATGCTCTCCATCTTTGATTATCTTGAACAAGACTCCAGCTC
TCGCTCGCTTTCAGAGCTCATTTTCACCACCAAGTTTACGTTTTTTTACA
ACAAATATCCTTCACAGAGGAGTTAAAACTAGCTGCATTAGTCCTGGGAA
AGAACTGATTTTTGATGAAAATTGTGACAATTCAATTTCTTTATCTAAGA
ATGAAGAAGAAAAGGAAGAGGAGGAGGAGGAGGTAGAAATGGAGGTGAAG
AGGGGAGGATTGGAGAAGCAGAGTATATGGAGTCAAATGAAGGAGATTGT
GATGTTTACAGGACCCGCCACAGGGCTTTGGCTCTGTGGGCCATTGATGA
GTCTCATTGATACTGCTGTTATTGGTCAAGGAAGCTCCGTCGAGCTTGCT
GCTCTAGGGCCAGGAACAGTTATGTGCGATTATTTGACTTACGTGTTCAT
GTTCCTTTCAATTGCAACTTCGAACATGGTTGCGACTTCCCTTGCCAGGC
AGGATAAAAATGAAGTGCAGCATCAAATATCAGTCTTGCTCTTTGTTGGG
TTGGCTTGTGGCTTCTTGATGCTTTTGTTTACAAGATTCTTTGGATCATG
GGCACTAACTGCTTTTACTGGGCCAAGGAATGTGCAC
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