FC924996

Overview
NameFC924996
Unique NameFC924996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC924996_ssr95 microsatellite FC924996_ssr95:95..106. BLAST: Citrus ESTs to Prunus persica proteins V1
FC924996_ssr117 microsatellite FC924996_ssr117:117..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14586 contig Ccv1_Contig14586:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924996 vs. ExPASy Swiss-Prot
Match: TGA21_TOBAC (TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.809e-21
Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  274 GAEDEKEAASGMPSFDSQFSNSEKLVTFDCTEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKSPTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDISTDADTDEKNQRFDRGQST 759
            G    +   +GMPSF SQ   S  + T    E     ++R S+ G  EQ +GFR+GD  N+  + + NST A+  A   +     T +++   SN +L T    S  +  +    SNLVS S  + ENWGESNMAD+  RTD STD D D+KNQ  + GQS+
Sbjct:    6 GTAGNRSGTTGMPSFISQIPVSNPMGT----EANNTNTSRMSDFGVLEQYLGFRIGDGANVNRSPLFNSTSATNPAVGFEVSG--TINRTLAPSNTSLPTATPRSQTMLLQ----SNLVSASGTHHENWGESNMADSGSRTDTSTDMDGDDKNQLIEAGQSS 157          
BLAST of FC924996 vs. ExPASy Swiss-Prot
Match: HBP1C_WHEAT (Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 60/146 (41.10%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  364 TEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKS------PTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDIST--DADTDEKNQRFDRGQSTAVVASD 777
            T    +Q +R ++LGA   S GFR+ D  N + N + N  K +  A TSDPLQ   + KS       T +    +   V+   L  +K  + NLV++ + N +NWGES+MAD SPRTD ST  D D DE+NQ F++GQ  A  ASD
Sbjct:   35 TNVNVMQPSRVADLGALAHSAGFRIEDLANFSTNNLFN-LKPNTHAYTSDPLQFGNYGKSISPTDLATTAAAAAAVTAVDPQALLQQKGVQPNLVALRTHNNDNWGESSMADTSPRTDTSTDPDIDIDERNQMFEQGQLAAPTASD 179          
The following BLAST results are available for this feature:
BLAST of FC924996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TGA21_TOBAC4.809e-2138.89TGACG-sequence-specific DNA-binding protein TGA-2.... [more]
HBP1C_WHEAT2.387e-2041.10Transcription factor HBP-1b(c1) (Fragment) OS=Trit... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YA22FM1 TF Citrus clementina cDNA clone KN0AAP8YA22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924996 ID=FC924996; Name=FC924996; organism=Citrus clementina; type=EST; length=778bp
GATTGGAAAGCTTGGAACGATCCTCTTTCGAACTCGAACTGGCACAAAAA
ATTAAAAAAAAAAGAAAAAATTAAAAATTAAAAATTAAATAAAGTCATCA
TCATCAGCATCATCAAATCATCATCATCATCAACAACAAAAAAATTCATC
AGCTGGGCTCAGTTCAGACTTTTGCTTGCTTTTTAGGGTAAGAGTGAGGA
GTGCTAATTTATTTCGGAAGACTAAGGGGATTAAAATGATGTCAATGCCT
ACTTAAATAGAGAAGTGAGGCCCGGGGCAGAAGATGAGAAGGAAGCAGCC
AGCGGAATGCCGAGCTTTGATTCTCAGTTTTCCAATTCCGAAAAACTTGT
GACTTTCGATTGCACAGAGGGCACTACAATCCAGTCTAATCGTGGGTCTA
ATTTGGGGGCATTTGAGCAATCAGTTGGATTTCGCTTAGGAGATGCTGTC
AACCTGACTGGAAACACTGTTCTTAATTCAACCAAAGCAAGTGGCCAGGC
AAATACTTCTGATCCCCTCCAAATTGTCACTTTTGATAAGTCACCAACTG
CATCTAACTTCAACCTTTCGACCATCCAAGTGGAGTCTCATAGGCTGCCA
TTTGAAAAGAATCATCGATCAAATCTGGTTTCTATTTCTAGTGGTAATAC
AGAGAATTGGGGAGAATCTAATATGGCTGATGCTAGTCCGAGGACCGATA
TCTCGACAGATGCAGACACAGATGAAAAAAATCAAAGGTTTGATAGAGGT
CAATCCACTGCTGTTGTAGCCTCTGATT
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