FC925004

Overview
NameFC925004
Unique NameFC925004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15237 contig Ccv1_Contig15237:16..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.895e-69
Identity = 69/89 (77.53%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKNVLTNFWGM+ TTDKLRSLV+KW +LIEA+VDVKTTDNFTLR+FCIGFTK+  NQVKRTCY Q+S I+QI RK REIMV  A +CD
Sbjct:   92 QGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCD 180

HSP 2 Score: 134.42 bits (337), Expect = 3.895e-69
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 3 
Query:   69 GRTRGFQRGRKEARR-SADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDV 329
            G+ +   +G+K  ++ +ADPF+KKDWYDIKAPS F  RNVGKTLVTRTQGTKIASEGLKHRVFEVSL DL N+E+H+YRKIRLRAEDV
Sbjct:    4 GKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDV 91
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.079e-69
Identity = 71/89 (79.78%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD + LRLFCIGFTKR PNQVKRTCY Q S IRQI RK  EIM   A+SCD
Sbjct:   92 QGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCD 180

HSP 2 Score: 133.265 bits (334), Expect = 5.079e-69
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 3 
Query:   69 GRTRGFQRGRKEARR-SADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDV 329
            G+ +   +G+K +++ + DPFAKKDWYDIKAPS F VRN+GKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E+ AYRKIRLRAEDV
Sbjct:    4 GKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDV 91
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.747e-66
Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QG+NVL  FWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD++TLRLFCI FTKR  NQVKRTCY Q+S IRQI RK R+IMV  A+SCD
Sbjct:   92 QGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCD 180

HSP 2 Score: 129.028 bits (323), Expect = 1.747e-66
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 3 
Query:   69 GRTRGFQRGRKEARRSA-DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDV 329
            G+ +   +GRK  ++ A DPF+KKDWYD+KAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E++AYRKIRLRAEDV
Sbjct:    4 GKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDV 91
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.886e-53
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKNVLTNF GM  TTDKLR+LV+KW TLIEA VDVKTTD + LRLFCIGFTKR PNQ+K+T Y ++S  R I +K  ++M    +  D
Sbjct:   91 QGKNVLTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTTDGYLLRLFCIGFTKRQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQID 179

HSP 2 Score: 109.383 bits (272), Expect = 6.886e-53
Identity = 53/88 (60.23%), Postives = 69/88 (78.41%), Query Frame = 3 
Query:   69 GRTRGFQRGRKEARRSA-DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDV 329
            G+ +   +G+K  ++   DPF KKDWYD+KAPS F VRN+GKTLVTRTQG K+AS+GLK RVFEVSL DL N+E+ ++RK RL +ED+
Sbjct:    4 GKNKRLTKGKKGTKKKIIDPFTKKDWYDVKAPSMFAVRNIGKTLVTRTQGKKLASDGLKGRVFEVSLADLQNDEQ-SFRKFRLISEDI 90
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.815e-51
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 3 
Query:   75 TRGFQRGRKEARRSADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVPREEC 344
            T+G ++G K  ++  DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDV  + C
Sbjct:   10 TKGGKKGAK--KKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNC 96

HSP 2 Score: 108.612 bits (270), Expect = 2.815e-51
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T Y Q   +RQI +K  EIM     + D
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 180
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.815e-51
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 3 
Query:   75 TRGFQRGRKEARRSADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVPREEC 344
            T+G ++G K  ++  DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDV  + C
Sbjct:   10 TKGGKKGAK--KKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNC 96

HSP 2 Score: 108.612 bits (270), Expect = 2.815e-51
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T Y Q   +RQI +K  EIM     + D
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 180
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 2.815e-51
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 3 
Query:   75 TRGFQRGRKEARRSADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVPREEC 344
            T+G ++G K  ++  DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDV  + C
Sbjct:   10 TKGGKKGAK--KKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNC 96

HSP 2 Score: 108.612 bits (270), Expect = 2.815e-51
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T Y Q   +RQI +K  EIM     + D
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 180
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.815e-51
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 3 
Query:   75 TRGFQRGRKEARRSADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVPREEC 344
            T+G ++G K  ++  DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDV  + C
Sbjct:   10 TKGGKKGAK--KKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNC 96

HSP 2 Score: 108.612 bits (270), Expect = 2.815e-51
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T Y Q   +RQI +K  EIM     + D
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 180
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 2.815e-51
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 3 
Query:   75 TRGFQRGRKEARRSADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVPREEC 344
            T+G ++G K  ++  DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDV  + C
Sbjct:   10 TKGGKKGAK--KKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNC 96

HSP 2 Score: 108.612 bits (270), Expect = 2.815e-51
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T Y Q   +RQI +K  EIM     + D
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 180
[Close]
BLAST of FC925004 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 2.815e-51
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 3 
Query:   75 TRGFQRGRKEARRSADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVPREEC 344
            T+G ++G K  ++  DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDV  + C
Sbjct:   10 TKGGKKGAK--KKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNC 96

HSP 2 Score: 108.612 bits (270), Expect = 2.815e-51
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:  331 QGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYPQTSPIRQIPRKTREIMVAHAASCD 597
            QGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T Y Q   +RQI +K  EIM     + D
Sbjct:   92 QGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTND 180
The following BLAST results are available for this feature:
BLAST of FC925004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
RS3A_HELAN3.895e-6977.5340S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_ORYSJ5.079e-6979.7840S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A1_ARATH1.747e-6676.4040S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_SUBDO6.886e-5362.9240S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_TAEGU2.815e-5162.2240S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_RAT2.815e-5162.2240S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE2.815e-5162.2240S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_HUMAN2.815e-5162.2240S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
RS3A_GECJA2.815e-5162.2240S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_BOVIN2.815e-5162.2240S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YP08FM1 TF Citrus clementina cDNA clone KN0AAP6YP08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925004 ID=FC925004; Name=FC925004; organism=Citrus clementina; type=EST; length=598bp
CGAACGAGCTACGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCT
GCACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAA
GGAGGCAAGAAGAAGTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATA
TCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTT
ACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACAGAGT
GTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCTTACA
GGAAGATCAGACTGAGAGCTGAAGATGTCCCAAGGGAAGAATGTTTTGAC
TAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGGTTA
GGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAGACCACTGAT
AACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAGACTTCCCAA
CCAGGTTAAGAGGACTTGCTACCCACAGACCAGCCCGATTAGACAGATTC
CCCGCAAGACGAGGGAGATCATGGTTGCCCACGCCGCCTCCTGTGACC
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