FC925011

Overview
NameFC925011
Unique NameFC925011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925011_ssr179 microsatellite FC925011_ssr179:179..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig513 contig Ccv1_Contig513:25..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925011 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.126e-22
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   54 MGVFPYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 257
            MGVF +VC+  GGEW+ KQ EG DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSLV+PTSAVF V
Sbjct:    1 MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSPTSAVFVV 67          
BLAST of FC925011 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.920e-22
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 3
Query:   54 MGVFPYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 257
            MGVF +VC+  GG WS KQ EG +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSLV+PTSAVFQV
Sbjct:    1 MGVFTFVCKNGGGAWSAKQHEG-ELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSPTSAVFQV 67          
BLAST of FC925011 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 6.830e-20
Identity = 55/121 (45.45%), Postives = 67/121 (55.37%), Query Frame = 3
Query:   54 MGVFPYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDEDMGFSLFD 416
            MGV+ +VCR NGGEW+ KQ   G++EASAA+ YELQR+LV  + +ADS  GVQSSFS+VTP+SAVFQV                                          SD+DMGFSLFD
Sbjct:    1 MGVYTFVCRNNGGEWTAKQ-HSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPSSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGAAAEAPKEEKKEEEKEESDDDMGFSLFD 120          
BLAST of FC925011 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.090e-17
Identity = 43/68 (63.24%), Postives = 58/68 (85.29%), Query Frame = 3
Query:   54 MGVFPYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 257
            MGV+ +VCR +G EW+ KQ++G +LEASAA+ YELQR+LV  + +ADS+ GVQSSFS+V+P+SAVFQV
Sbjct:    1 MGVYTFVCRSSGDEWTAKQLKG-ELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSPSSAVFQV 67          
The following BLAST results are available for this feature:
BLAST of FC925011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RLA32_ARATH1.126e-2279.4160S acidic ribosomal protein P3-2 OS=Arabidopsis t... [more]
RLA31_ARATH1.920e-2279.4160S acidic ribosomal protein P3-1 OS=Arabidopsis t... [more]
RLA3_MAIZE6.830e-2045.4560S acidic ribosomal protein P3 OS=Zea mays GN=RPP... [more]
RLA3_ORYSJ1.090e-1763.2460S acidic ribosomal protein P3 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YP11FM1 TF Citrus clementina cDNA clone KN0AAP6YP11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925011 ID=FC925011; Name=FC925011; organism=Citrus clementina; type=EST; length=517bp
CTGTTTATCTACTCCCTTGTGCCCCTCAAAGACAAAAAGAATATCAAGTG
AAAATGGGAGTTTTCCCATACGTGTGCAGAAAAAATGGGGGAGAATGGAG
CGGAAAGCAGATAGAGGGGGGAGACTTAGAAGCCTCTGCAGCATCAACAT
ACGAGCTCCAGAGAAAGCTGGTCCAGACCTCTCTCTCTGCTGATTCTTCT
GGTGGGGTCCAGTCCTCTTTCTCCCTCGTCACACCTACGTCTGCTGTTTT
CCAGGTGATTATTGGTGGTGCTGTTGGTAGTGGTTTCATTGGAGGTGGAG
CTGCAGCTTCAGCCCCTTCAAGAGGCGGTGGAGCAGCTGCTGAGGCTCCT
GCTGCCGAAGAGAAGAAGGAAGAGAAAGAGGAGAGTGATGAAGACATGGG
TTTCTCTCTTTTTGATTAGGTTATATAATTCCAGTTCTCTTCTTGGGACT
TGTATTTTGTTATGCTTTTATGTCGACTCCAAAATTGCTCTGCCACTGGC
TTAGATTTTATTTTTGT
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