FC925015

Overview
NameFC925015
Unique NameFC925015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3660 contig Ccv1_Contig3660:16..436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925015 vs. ExPASy Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.649e-42
Identity = 62/92 (67.39%), Postives = 80/92 (86.96%), Query Frame = 2
Query:  146 EKAELSEIKTGLDDADALIRKMDLEARSLQPSVKATLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLM 421
            +K  LSEIK+G+++A+AL++KMDLEAR+L P+VK++LL KLREYK+DLNN K EVKR+TSGN+N  ARDELLE+GMAD +  SADQR RL+M
Sbjct:   34 KKQNLSEIKSGVEEAEALVKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQRSRLMM 125          

HSP 2 Score: 62.003 bits (149), Expect = 2.649e-42
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 3
Query:   48 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQN 158
            MSQ FE YERQYCE+SA LS+KCT+A ALDGE KKQN
Sbjct:    1 MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQN 37          
BLAST of FC925015 vs. ExPASy Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 8.270e-41
Identity = 62/92 (67.39%), Postives = 79/92 (85.87%), Query Frame = 2
Query:  146 EKAELSEIKTGLDDADALIRKMDLEARSLQPSVKATLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLM 421
            +K +LSEIK+GL++A+ LIRKMDLEAR+L P++K++LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD    SADQR RL+M
Sbjct:   34 KKQKLSEIKSGLENAEVLIRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQRARLMM 125          

HSP 2 Score: 60.4622 bits (145), Expect = 8.270e-41
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 3
Query:   48 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQ 155
            MS VF+GYERQYCELSA LS+KC++A +LDGE KKQ
Sbjct:    1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQ 36          
BLAST of FC925015 vs. ExPASy Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 4.734e-38
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 2
Query:  146 EKAELSEIKTGLDDADALIRKMDLEARSLQPSVKATLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLM 421
            +K +++EIK+G+D+AD LIRKMDLEARSLQPS KA  LSKLREYK+DLN LK E KRV+S +   ++R+EL+ESGMAD   VSADQRGRL M
Sbjct:   35 KKGKIAEIKSGIDEADVLIRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQRGRLAM 126          

HSP 2 Score: 53.1434 bits (126), Expect = 4.734e-38
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 3
Query:   48 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKK 152
            MS VFEGYERQYCELS  LSRKC +AS L +GE KK
Sbjct:    1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKK 36          
The following BLAST results are available for this feature:
BLAST of FC925015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
VTI13_ARATH2.649e-4267.39Vesicle transport v-SNARE 13 OS=Arabidopsis thalia... [more]
VTI11_ARATH8.270e-4167.39Vesicle transport v-SNARE 11 OS=Arabidopsis thalia... [more]
VTI12_ARATH4.734e-3867.39Vesicle transport v-SNARE 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YP15FM1 TF Citrus clementina cDNA clone KN0AAP6YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925015 ID=FC925015; Name=FC925015; organism=Citrus clementina; type=EST; length=421bp
CGATCGTCTCCACGATCACTTCCCGTTGGTGAGGGATTCGGGCGAAGATG
AGCCAGGTGTTTGAAGGATACGAGCGCCAATACTGCGAGCTCTCTGCTGG
ATTATCGCGGAAGTGCACAGCGGCAAGTGCTCTTGATGGAGAGCTGAAAA
AGCAGAACTTTCTGAAATTAAAACTGGATTGGATGATGCTGATGCTCTGA
TTCGGAAAATGGACCTAGAGGCAAGAAGTTTGCAGCCGAGTGTGAAGGCA
ACGCTTCTGTCTAAGTTAAGAGAATACAAAACCGATTTGAACAATTTGAA
AAATGAAGTGAAAAGAGTCACATCAGGTAATGTCAACCAGGCTGCCCGCG
ATGAGTTGTTGGAGTCGGGAATGGCAGATGCCATGATGGTATCGGCTGAT
CAAAGGGGAAGATTGTTGATG
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