FC925016

Overview
NameFC925016
Unique NameFC925016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14589 contig Ccv1_Contig14589:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925016 vs. ExPASy Swiss-Prot
Match: DIM_PEA (Cell elongation protein diminuto OS=Pisum sativum GN=DIM PE=2 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 3.700e-116
Identity = 204/238 (85.71%), Postives = 224/238 (94.12%), Query Frame = 1
Query:   31 MSDLEAPLRPKRKKGIVDFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLT 744
            MSDLEAPLRPKRKK  VD+ V+FRWILV+FVVLPIS T+YFL YLGDV+S+ KS+K RQKEHDENV+KVV RLK+RNPSKDGLVCTARKPW+AVGMRNVDYKRARHFEVDLS FRNILDIDK+RMIA+VEPLVNMGQI+R T PMNL+LAVVAELDDLTVGGLINGYGIEGSSH YGLFSDTVVA+EI+LADG +V+ATKDNEY DLFYAIPWSQGTLGLLV+AE+KLIPIKEYMKLT
Sbjct:    1 MSDLEAPLRPKRKKIWVDYFVKFRWILVIFVVLPISFTLYFLTYLGDVRSEWKSFKTRQKEHDENVQKVVNRLKKRNPSKDGLVCTARKPWVAVGMRNVDYKRARHFEVDLSPFRNILDIDKERMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGLINGYGIEGSSHKYGLFSDTVVAFEIILADGSLVKATKDNEYSDLFYAIPWSQGTLGLLVAAEVKLIPIKEYMKLT 238          
BLAST of FC925016 vs. ExPASy Swiss-Prot
Match: DIM_ARATH (Cell elongation protein DIMINUTO OS=Arabidopsis thaliana GN=DIM PE=1 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 7.473e-109
Identity = 193/239 (80.75%), Postives = 219/239 (91.63%), Query Frame = 1
Query:   31 MSDLEAPL-RPKRKKGIVDFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLT 744
            MSDL+ PL RPKRKK  VD+ V+FRWI+V+F+VLP S T YFLIYLGD+ S+ KS++KRQKEHDENVKKV+KRLK R+ SKDGLVCTARKPWIAVGMRNVDYKRARHFEVDL  FRNIL+I+K++M A+VEPLVNMGQISRAT PMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF+DTV AYEIVLA G++VRAT+DNEY DL+YAIPWSQGTLGLLV+AEI+LI +KEYM+LT
Sbjct:    1 MSDLQTPLVRPKRKKTWVDYFVKFRWIIVIFIVLPFSATFYFLIYLGDMWSESKSFEKRQKEHDENVKKVIKRLKGRDASKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLGEFRNILEINKEKMTARVEPLVNMGQISRATVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFADTVEAYEIVLAGGELVRATRDNEYSDLYYAIPWSQGTLGLLVAAEIRLIKVKEYMRLT 239          
BLAST of FC925016 vs. ExPASy Swiss-Prot
Match: DHC24_RAT (24-dehydrocholesterol reductase OS=Rattus norvegicus GN=Dhcr24 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.032e-42
Identity = 96/227 (42.29%), Postives = 140/227 (61.67%), Query Frame = 1
Query:   64 RKKGIVDFLVQFRWILVVFVVLPISVTIYFLIYLGD-VKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKL 741
            R KG+   L+  RW+ V   +LP+S+      Y+   V   + S  +  ++  ++++K V+  KE+       +CT R  W+ V +R   YK+  H  + ++   +IL++D  + I +VEPLV+MGQ++     +  +L V+ ELDDLTVGGLI G GIE SSH YGLF     AYE++LADG  VR T  +E  DLFYA+PWS GTLG LV+AEI++IP K+Y+KL
Sbjct:   19 RVKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKLSSAPRLHEQRVQDIQKQVREWKEQGSKT--FMCTGRPGWLTVSLRVGKYKKT-HKNIMINLM-DILEVDTKKQIVRVEPLVSMGQVTALLNSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTAYELILADGSFVRCT-PSENSDLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKL 240          
BLAST of FC925016 vs. ExPASy Swiss-Prot
Match: DHC24_MACFA (24-dehydrocholesterol reductase OS=Macaca fascicularis GN=DHCR24 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.032e-42
Identity = 97/227 (42.73%), Postives = 138/227 (60.79%), Query Frame = 1
Query:   64 RKKGIVDFLVQFRWILVVFVVLPISVTIYFLIYLGD-VKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKL 741
            R KG+   L+  RW+ V   +LP+S+      Y+   V   + S  +  ++   +++K V+  KE+       +CT R  W+ V +R   YK+  H  + ++   +IL++D  + I +VEPLV MGQ++     +  +L V+ ELDDLTVGGLI G GIE SSH YGLF     AYE+VLADG  VR T  +E  DLFYA+PWS GTLG LV+AEI++IP K+Y+KL
Sbjct:   19 RVKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKLSSAPRLHEQRVRDIQKQVREWKEQGSKT--FMCTGRPGWLTVSLRVGKYKKT-HKNIMINLM-DILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTAYELVLADGSFVRCT-PSENSDLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKL 240          
BLAST of FC925016 vs. ExPASy Swiss-Prot
Match: DHC24_HUMAN (24-dehydrocholesterol reductase OS=Homo sapiens GN=DHCR24 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.032e-42
Identity = 97/227 (42.73%), Postives = 138/227 (60.79%), Query Frame = 1
Query:   64 RKKGIVDFLVQFRWILVVFVVLPISVTIYFLIYLGD-VKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKL 741
            R KG+   L+  RW+ V   +LP+S+      Y+   V   + S  +  ++   +++K V+  KE+       +CT R  W+ V +R   YK+  H  + ++   +IL++D  + I +VEPLV MGQ++     +  +L V+ ELDDLTVGGLI G GIE SSH YGLF     AYE+VLADG  VR T  +E  DLFYA+PWS GTLG LV+AEI++IP K+Y+KL
Sbjct:   19 RLKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKLSSAPRLHEQRVRDIQKQVREWKEQGSKT--FMCTGRPGWLTVSLRVGKYKKT-HKNIMINLM-DILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTAYELVLADGSFVRCT-PSENSDLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKL 240          
BLAST of FC925016 vs. ExPASy Swiss-Prot
Match: DHC24_MOUSE (24-dehydrocholesterol reductase OS=Mus musculus GN=Dhcr24 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.029e-41
Identity = 96/227 (42.29%), Postives = 139/227 (61.23%), Query Frame = 1
Query:   64 RKKGIVDFLVQFRWILVVFVVLPISVTIYFLIYLGD-VKSDMKSYKKRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKL 741
            R KG+   L+  RW+ V   +LP+S+      Y+   V   + S  +  ++   +++K V+  KE+       +CT R  W+ V +R   YK+  H  + ++   +IL++D  + I +VEPLV+MGQ++     +  +L V+ ELDDLTVGGLI G GIE SSH YGLF     AYE++LADG  VR T  +E  DLFYA+PWS GTLG LV+AEI++IP K+Y+KL
Sbjct:   19 RVKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKLSSAPRLHEQRVRDIQKQVREWKEQGSKT--FMCTGRPGWLTVSLRVGKYKKT-HKNIMINLM-DILEVDTKKQIVRVEPLVSMGQVTALLNSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTAYELILADGSFVRCT-PSENSDLFYAVPWSCGTLGFLVAAEIRIIPAKKYVKL 240          
BLAST of FC925016 vs. ExPASy Swiss-Prot
Match: DIML_CAEEL (Diminuto-like protein OS=Caenorhabditis elegans GN=F52H2.6 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.714e-34
Identity = 89/241 (36.93%), Postives = 135/241 (56.02%), Query Frame = 1
Query:   55 RPKRKKGIVDFLV-QFRWILVVFVVLPISVTIYFLIYLGDVKSDM-KSYKKRQKEHDENVKKVVKRLKERNPS-KDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYK--------DLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLT 744
            +P R +  V+F++  FRW+ VV  +LP+S   +    + D ++ +  +       H   VK + ++LKE N + +   +  AR  W+ +  R   YK     ++      +ILD+D ++M  K EP V MGQ+S+       +L V+ ELDDLTVGGLING G+E  S  YG+F      YE+V++DG++     D+  K         LF+AIPWSQGT+  LV+A IK+IP K+Y+KLT
Sbjct:   10 KPTRWEKCVEFIMFHFRWVFVVPFLLPLS---FLFNTVFDFRNRIVHAVNSAPNAHVRKVKHIQEQLKEWNDNGRKSKLVNARPGWLTMSFRFPLYKE-NATKIATDKLFDILDLDVEKMTVKAEPGVTMGQLSQYLISRGYTLPVLPELDDLTVGGLINGCGVESGSFKYGMFQHICTGYEVVMSDGELKNVYPDSAAKTEQAKQDNSLFFAIPWSQGTICFLVAATIKIIPCKKYVKLT 246          
The following BLAST results are available for this feature:
BLAST of FC925016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DIM_PEA3.700e-11685.71Cell elongation protein diminuto OS=Pisum sativum ... [more]
DIM_ARATH7.473e-10980.75Cell elongation protein DIMINUTO OS=Arabidopsis th... [more]
DHC24_RAT6.032e-4242.2924-dehydrocholesterol reductase OS=Rattus norvegic... [more]
DHC24_MACFA6.032e-4242.7324-dehydrocholesterol reductase OS=Macaca fascicul... [more]
DHC24_HUMAN6.032e-4242.7324-dehydrocholesterol reductase OS=Homo sapiens GN... [more]
DHC24_MOUSE1.029e-4142.2924-dehydrocholesterol reductase OS=Mus musculus GN... [more]
DIML_CAEEL2.714e-3436.93Diminuto-like protein OS=Caenorhabditis elegans GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YO11FM1 TF Citrus clementina cDNA clone KN0AAP1YO11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925016 ID=FC925016; Name=FC925016; organism=Citrus clementina; type=EST; length=745bp
CAGCTTCTCTCTTTGTGTTTACTTCCTACCATGTCGGATCTTGAGGCACC
GCTGCGCCCAAAAAGGAAAAAGGGAATTGTGGACTTTCTTGTCCAGTTCC
GATGGATCCTCGTTGTTTTTGTTGTCCTCCCCATCTCTGTCACCATTTAC
TTCCTCATATATCTTGGAGATGTCAAATCTGATATGAAGTCCTACAAGAA
GCGTCAAAAGGAGCATGATGAAAATGTCAAGAAAGTTGTTAAACGGCTGA
AAGAGAGGAATCCATCAAAGGATGGTCTTGTCTGCACAGCTCGTAAACCC
TGGATCGCAGTTGGAATGAGGAATGTGGACTACAAGCGAGCGCGGCATTT
TGAAGTTGACTTATCAGCTTTTCGTAACATCCTTGACATTGACAAAGATA
GAATGATTGCAAAAGTTGAGCCTCTTGTCAACATGGGGCAAATCAGCAGA
GCTACATGCCCAATGAACCTTTCCCTTGCAGTGGTTGCAGAGCTTGATGA
TCTTACTGTTGGTGGCCTTATCAATGGCTATGGAATTGAAGGAAGTTCTC
ACATCTATGGCCTATTTTCTGATACTGTTGTTGCATATGAGATTGTTCTG
GCAGATGGCCAAGTTGTCAGAGCCACCAAGGACAATGAGTATAAAGATCT
TTTCTATGCAATTCCATGGTCTCAGGGGACACTAGGGCTTCTTGTCTCGG
CTGAGATCAAGCTTATACCCATTAAGGAATACATGAAGCTGACTT
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