FC925041

Overview
NameFC925041
Unique NameFC925041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925041_ssr36 microsatellite FC925041_ssr36:36..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3758 contig Ccv1_Contig3758:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_MOUSE (Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus GN=Cox10 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.931e-38
Identity = 81/168 (48.21%), Postives = 105/168 (62.50%), Query Frame = 1
Query:  346 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            LSK +L+ LVV+T+  GFAL  G   D +    T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G ALL W  N LT  L   N+ LY   YTPLK++   NTWVGA+VGAIPP++GWTAA G +    ++L   LY WQ PHF
Sbjct:  159 LSKIKLTALVVSTTSAGFALAPGP-FDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRVSITNTWVGAVVGAIPPVMGWTAATGSLDAGALLLGGILYSWQFPHF 325          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_HUMAN (Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens GN=COX10 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.101e-36
Identity = 80/169 (47.34%), Postives = 103/169 (60.95%), Query Frame = 1
Query:  343 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            +LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPLK+I   NTWVGA+VGAIPP++GWTAA G +     +L   LY WQ PHF
Sbjct:  159 QLSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHF 326          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_PONAB (Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii GN=COX10 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.583e-36
Identity = 80/168 (47.62%), Postives = 102/168 (60.71%), Query Frame = 1
Query:  346 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ M RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPLK+I   NTWVGA+VGAIPP++GWTAA G +     +L   LY WQ PHF
Sbjct:  160 LSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHF 326          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_EMENI (Protoheme IX farnesyltransferase, mitochondrial OS=Emericella nidulans GN=cox10 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.139e-32
Identity = 80/213 (37.56%), Postives = 113/213 (53.05%), Query Frame = 1
Query:  304 PFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTI---------------DLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAV----------------GHVSLNGMILPAALYFWQKPHF 849
            P + +R     ++ L+K RLS LV+ ++ + + +   S+I                     +  TGT + A SAN+LN +FE   DA+M RT  RPL  G ++ R AV +A +    G  LL +  N    GL+A+N+ LYAFVYTPLK++H +NTW+GAIVG IPP++GW AA                 G  SL G +L   L+ WQ PHF
Sbjct:  142 PKTSLRRKLAAFFALTKPRLSFLVLLSTTSAYGIYPVSSILALDPTIAPLPTLSTSTLTFLYLTTGTFLSACSANTLNMIFEPKYDAQMSRTRNRPLVRGLVTRRAAVFFAIATAAVGLGLLYFGTNPTVTGLSAANIALYAFVYTPLKRMHVINTWIGAIVGGIPPMMGWVAAAGQGATTGHDTWRDMLFGENSLGGWLLGGILFAWQFPHF 354          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_ASPFU (Protoheme IX farnesyltransferase, mitochondrial OS=Aspergillus fumigatus GN=cox10 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.139e-32
Identity = 88/214 (41.12%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  304 PFSLIRHYGRCYWELSKARLSMLVVATSGTGFA----------------LGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV----------------SLNGMILPAALYFWQKPHF 849
            P + +R     +  L+K RLS L+V T+ + +                 L + ST  L  L  T TGT + + SAN+LN L E   DA M RT  RPL  G +S R AV +A +   AG  LL    N  T  L+ASN+ LYAFVYTPLK+I  +NTWVGA+VG IPPL+GWTAA G                  S+ G +L   L+ WQ PHF
Sbjct:  150 PATSLRRKLAAFLALTKPRLSFLIVLTTTSAYGMYPISSLLTLDPSMTPLPTLSTSTLTFLYLT-TGTFLSSCSANTLNMLLEPKYDALMSRTRNRPLVRGLLSRRAAVLFAIATAAAGLGLLYIGTNPTTTALSASNICLYAFVYTPLKRISVINTWVGAVVGGIPPLMGWTAAAGQTATTGHDSWRDMLFSKDSIGGWLLGGILFAWQFPHF 362          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_SCHPO (Protoheme IX farnesyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=cox10 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31
Identity = 73/174 (41.95%), Postives = 104/174 (59.77%), Query Frame = 1
Query:  337 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLN---GMILPAALYFWQKPHF 849
            + EL K RL++LVV ++ + +AL     +    L W   GT + + SAN+ NQ  E   D +M RT  RP+P G I   +A  +A+  G+AGT+ +++  N     L   N++LY  +YTPLK+I  VNTWVG++VGAIPPL+GW A  G   L+   G+I  A L+ WQ PHF
Sbjct:   87 FLELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMARTRSRPIPRGAIRPEYAWLFATLTGIAGTS-MSFLVNPTVGWLGLGNIVLYMGIYTPLKRISIVNTWVGSLVGAIPPLMGWAACSGGDLLSHPGGLITAAMLFAWQFPHF 259          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_GIBZE (Protoheme IX farnesyltransferase, mitochondrial OS=Gibberella zeae GN=COX10 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31
Identity = 84/207 (40.58%), Postives = 109/207 (52.66%), Query Frame = 1
Query:  313 LIRHYGRCYWELSKARLSMLVVATSGTGFALG------SGSTIDLAGLC-----WTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV-----------------SLNGMILPAALYFWQKPHF 849
            L RH   C   L+K RL+MLVV T+   +AL       S ST +   L      +   GT   +ASAN+LN L+E S DAKM RT  RPL    IS R AV +A   G  GT  L +  N   +GL  +N+++YA +YTPLK +   NTW+GA+VG IPPL+GW AA G                   S+ G ++   L+ WQ PHF
Sbjct:  151 LRRHLSACL-SLAKPRLTMLVVLTAMATYALYPVPEMLSPSTTETPSLSPLTLLFLTIGTTFCSASANALNMLYEPSTDAKMTRTRNRPLVRNLISKRAAVLFAILSGFVGTGALYFGVNPTVSGLGFANIVIYAGMYTPLKAVTAFNTWIGAVVGGIPPLMGWAAAAGETATKDGSWRELLFASDGSSIGGWVMAGLLFAWQFPHF 356          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_ACIBL (Protoheme IX farnesyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=ctaB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.319e-30
Identity = 71/177 (40.11%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTC----TGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            R Y EL+KAR++ L+V T+ TG   G+  +  L  + WT      G  +V+    ++N++ E  +DA+M+RT  RPL +G +S+ H +  +  + + G   L    N LTA LA    ++Y   YTPLK+IHP+ T +GA  GA+PP+LGWTA  GH+    + L A L+FWQ PHF
Sbjct:   20 RDYSELTKARVTTLIVMTAWTGAFFGAAKS-GLPLVSWTLFHALLGIGLVSGGTAAMNEVIERESDARMRRTAIRPLVTGSMSLGHGMVVSLVMMIGGAGYLGLMTNWLTAALALMTSVVYLMAYTPLKKIHPICTTIGAFPGAMPPVLGWTAIRGHLGWEAVALFAILFFWQFPHF 195          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COX10_NEUCR (Protoheme IX farnesyltransferase, mitochondrial OS=Neurospora crassa GN=cox-10 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.548e-30
Identity = 81/199 (40.70%), Postives = 108/199 (54.27%), Query Frame = 1
Query:  346 LSKARLSMLVVATSGTGFALG------SGSTIDLA--------GLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGH-----------------VSLNGMILPAALYFWQKPHF 849
            LSK RL++LVV ++   +AL       + S +D +         L +  TGT + +ASAN+LN L+E   D+KM RT  RPL    ++ + AV +A   G+AGT  L +  N   + L A+N+ LYA  YTPLK+I  VNTWVGAIVG IPPL+GW AA G                   SL G +    L+ WQ PHF
Sbjct:  187 LSKPRLTVLVVLSAMVPYALYPVPSFLTSSALDTSLAPSLSPLTLLFLTTGTTLCSASANALNMLYEPDTDSKMTRTRTRPLVRRLLTTKAAVLFAVGCGLAGTLALYFGVNPTVSFLGAANIALYAGAYTPLKRISAVNTWVGAIVGGIPPLMGWAAAAGESATGDGTWRELLFASDGSSLGGWLFAGLLFAWQFPHF 385          
BLAST of FC925041 vs. ExPASy Swiss-Prot
Match: COXX_CYTH3 (Protoheme IX farnesyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ctaB PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.904e-29
Identity = 64/173 (36.99%), Postives = 99/173 (57.23%), Query Frame = 1
Query:  331 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQKPHF 849
            + Y++L+K RL+  V  +SG G+ L     +D   L     G   +  SAN +NQ+ E  +D  MKRT  RPLP G I+V+ A+  ++   +AGT +LA  + +    L+  +L++Y+F+YTPLK + P+  ++GA  GA PP++GW A  G       +L A  + WQ PHF
Sbjct:    6 QAYFKLTKFRLTSTVAFSSGMGYILAERGQVDWLNLVLFLIGGFSITVSANIINQIIERESDKLMKRTASRPLPEGIITVQQAIITSALFLIAGTVILAVYSTLNALILSLISLVIYSFIYTPLKTVSPIAVFIGAFPGAFPPMIGWIAVTGEYGWEPGVLFAIQFLWQFPHF 178          
The following BLAST results are available for this feature:
BLAST of FC925041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
COX10_MOUSE2.931e-3848.21Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_HUMAN2.101e-3647.34Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_PONAB3.583e-3647.62Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_EMENI3.139e-3237.56Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_ASPFU3.139e-3241.12Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_SCHPO2.657e-3141.95Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COX10_GIBZE2.657e-3140.58Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COXX_ACIBL1.319e-3040.11Protoheme IX farnesyltransferase OS=Acidobacteria ... [more]
COX10_NEUCR8.548e-3040.70Protoheme IX farnesyltransferase, mitochondrial OS... [more]
COXX_CYTH31.904e-2936.99Protoheme IX farnesyltransferase OS=Cytophaga hutc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB13FM1 TF Citrus clementina cDNA clone KN0AAP8YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925041 ID=FC925041; Name=FC925041; organism=Citrus clementina; type=EST; length=851bp
CGGATTGCTCCCTTATAAACAAAAAATAAAAATAAAAATAAATAAATAAA
TAAATGATCTGGAAAATTCATTAGCAATACTCGGTTTCATGAAACCAAGC
AAATTCAACTAATCCAGGGTTCACCAGAATACCAAAACATGTGGAGAAAC
GTCGTCGTCCGACGACTTATATCTTATTCTCAGTCCAATCGGAGTCAACA
TTCATCGACAGAATTAGGGTTTCTCGTAAACAGAAAATGCCACGGTGTAC
GATCTTCTTCTTCAGCTTCAGCTTCGGATTCGGCCACCGGTGCAGCTGCT
GATCCGTTCTCGTTGATTCGCCATTACGGTCGCTGCTATTGGGAACTCTC
CAAAGCTCGCCTCAGCATGTTAGTTGTTGCTACATCAGGAACTGGATTTG
CATTGGGGAGTGGAAGTACCATTGATTTAGCTGGACTTTGTTGGACCTGT
ACTGGCACTATGATGGTTGCTGCCTCTGCTAATTCTCTTAATCAGTTGTT
TGAGATAAGCAATGATGCCAAAATGAAGCGAACAATGCGAAGACCTCTGC
CTTCTGGCAGAATTTCGGTACGCCATGCTGTCACCTGGGCATCTTCTGTT
GGTGTTGCTGGCACTGCTTTATTGGCATGGAAGGCTAATATGTTGACAGC
TGGGCTTGCAGCCTCTAACCTTATTCTTTATGCATTTGTGTACACGCCAT
TGAAGCAGATTCACCCGGTCAATACGTGGGTGGGGGCTATTGTTGGAGCT
ATTCCACCTCTTCTTGGGTGGACTGCAGCTGTTGGCCATGTTTCTCTAAA
TGGAATGATTCTCCCTGCAGCTCTCTATTTTTGGCAAAAACCCCATTTTA
T
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