FC925046

Overview
NameFC925046
Unique NameFC925046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14594 contig Ccv1_Contig14594:1..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  164 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN-XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKC 685
            L D +I  +NE+P AGWKA ++ +F  +++   + L+G +     +       V  HD ++++P  FD+R  WP C +IS+I DQ  CGSCWAFGAVEA++DR CI  G   S  ++                  +P  AW Y+V  G+VT         +  +H GC+P YP PKC
Sbjct:   30 LSDEMISFINEHPDAGWKADKSDRF--HSLDDARILMGARKEDAEMKRNRRPTVDHHDLNVEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALDLISCCKDCGDGCQGGFPGVAWDYWVKRGIVT-------GGSKENHTGCQP-YPFPKC 196          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 77/213 (36.15%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  158 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHY 736
            H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY
Sbjct:   24 HPLSDELVNYVNKQ-NTTWQAGHN--FYNVDVSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVSGGLYDSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHY 225          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.130e-25
Identity = 77/213 (36.15%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  158 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHY 736
            H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDVSYLKKLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHY 225          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.493e-24
Identity = 76/213 (35.68%), Postives = 95/213 (44.60%), Query Frame = 2
Query:  158 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHY 736
            H L D ++  VN+     W+A  N  F N  +   K L G         LG P         + LKLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHY 225          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.408e-24
Identity = 75/217 (34.56%), Postives = 98/217 (45.16%), Query Frame = 2
Query:  146 KLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDSTGCSH------PGCEPAYPTPKCVRKC-VKKNQLWRNSKHY 736
            K  SH L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP+SFDAR  W  C TI++I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY
Sbjct:   20 KPSSHPLSDDMINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPNLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPY-TIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHY 225          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 71/195 (36.41%), Postives = 101/195 (51.79%), Query Frame = 2
Query:  116 TFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLS-VNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKC 685
            TF E  +S        L D II  +NE+P AGW+A ++ +F  +++   +  +G +     L       V  +D ++++P +FD+R  WP C +I+ I DQ  CGSCW+FGAVEA+SDR CI  G   N+ LS V+                  P  AW Y+V  G+VT        S+  +H GCEP YP PKC
Sbjct:   13 TFLEAHISVKNEKFEPLSDDIISYINEHPNAGWRAEKSNRF--HSLDDARIQMGARREEPDLRRKRRPTVDHNDWNVEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCCESCGLGCEGGILGP--AWDYWVKEGIVTA-------SSKENHTGCEP-YPFPKC 195          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 75/206 (36.41%), Postives = 96/206 (46.60%), Query Frame = 2
Query:  170 DSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVP------------VKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH--------PGCEPAYPTPKCVRKCV 700
            D +I  VNEN    W A +  +FS+        + G     K  L+GV              KT D  L +P+SFD+R  WP+C +I  I DQ  CGSCWAFGAVEA+SDR CI  H  + ++LS +                  P++AWRY+V  G+VT         C PY     C H        P     YPTPKC +KCV
Sbjct:   44 DDLIDYVNENQNL-WTAKKQRRFSS--------VYGENDKAKWGLMGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGCNGGD-PLAAWRYWVKDGIVTGSNYTANNGCKPY-PFPPCEHHSKKTHFDPCPHDLYPTPKCEKKCV 238          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CTSB_DICDI (Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 66/183 (36.07%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  212 WKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK-SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP-------TPKCVRKCVKKNQL-WRNSKH 733
            W   +  QF N  VGQ   LLG K +P    L   +K++D   +++P SF+A++ WP C+TIS+I +Q  CGSCWAFGA E+ +DR CIH   N+ LS                   +  SAW +    G V+EEC PY      + P C PA         TP C ++C   + L +   KH
Sbjct:   39 WVEEQTDQFDNIKVGQ---LLGFKRSPNRPKL--QIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAF--SAWNWLRKQGAVSEECLPY------TIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKH 208          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 72/213 (33.80%), Postives = 94/213 (44.13%), Query Frame = 2
Query:  164 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK---SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKCVK-KNQLWRNSKHYSIS 745
            L D ++  VN+     WKA  N  F N  +   K L G       +L G  +   D     + LP+SFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   +P  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KH+  S
Sbjct:   26 LSDELVNFVNKQ-NTTWKAGHN--FYNVDLSYVKKLCGA------ILGGPKLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCS 228          
BLAST of FC925046 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.545e-21
Identity = 69/214 (32.24%), Postives = 94/214 (43.93%), Query Frame = 2
Query:  158 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVK----THDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGC--------------SHPGCEPAYPTPKCVRKC-VKKNQLWRNSKHY 736
            H L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP++FDAR  W  C TI +I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   YP  AW ++   G+V+     Y    GC              S P C     TP+C + C    +  ++  KH+
Sbjct:   24 HPLSDDLINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPKLPGRVAFGEDIDLPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVSG--GVYNSHVGCLPYTIPPCEHHVNGSRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHF 225          
The following BLAST results are available for this feature:
BLAST of FC925046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CYSP_SCHJA3.007e-2536.16Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATB_MACFA3.928e-2536.15Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_PONAB5.130e-2536.15Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_HUMAN1.493e-2435.68Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_RAT7.408e-2434.56Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CYSP_SCHMA9.675e-2436.41Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CPR6_CAEEL2.155e-2336.41Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CTSB_DICDI1.070e-2236.07Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE... [more]
CATB_BOVIN3.112e-2233.80Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CATB_MOUSE1.545e-2132.24Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YB16FM1 TF Citrus clementina cDNA clone KN0AAP8YB16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925046 ID=FC925046; Name=FC925046; organism=Citrus clementina; type=EST; length=747bp
CTCTTCGTCCTTCCCGAGCCAGTCATCCATGGCTTCATCTCACCTCTTTC
TTACTACATGTTTGTTAATTCTTGGCGTTATCTCCTCCCAGCATGCTGGT
GGAGTTTATCATAAGACTTTTGCAGAGGGAGTGGTTTCCAAGCTCAAGCT
TGATTCTCATATTCTCCAGGATTCAATCATCAAAGAAGTGAATGAGAACC
CTAAGGCTGGATGGAAAGCTGCCAGAAATCCTCAATTTTCCAATTACACT
GTTGGGCAATTTAAGCACCTTCTTGGAGTCAAGCCAACACCTAAAGGGCT
GCTCTTGGGTGTCCCTGTTAAAACTCATGACAAATCCTTGAAGTTGCCTA
AAAGCTTTGATGCAAGGTCCGCTTGGCCACAATGCAGCACCATTAGTAGG
ATCCTAGATCAGGGCCATTGTGGTTCTTGTTGGGCTTTTGGTGCTGTTGA
AGCGCTATCTGATCGTTTCTGCATCCATTTTGGCATGAACCTATCTCTAT
CAGTTAATGATCTTTTAGCCTGCTGTGGCTTTTTGTGTGGAGATGGTTGT
GACGGGGGTTATCCAATTTCTGCATGGCGATACTTTGTCCACCATGGTGT
TGTTACCGAAGAGTGTGATCCCTACTTTGATAGTACTGGCTGTTCCCACC
CTGGTTGTGAGCCGGCATATCCTACTCCAAAGTGTGTGAGGAAGTGCGTC
AAGAAAAACCAGCTTTGGAGGAATTCAAAGCACTACAGTATTAGTGC
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