FC925064

Overview
NameFC925064
Unique NameFC925064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1938 contig Ccv1_Contig1938:3..363. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925064 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.007e-52
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 2 
Query:   35 VDDEYG--KESSDSKFSWSDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEAR 361
            +++EYG  KE   S+F W DHWYPVSLVEDLDPN+PT FQLLGRDLVLWFD N  KW AFDD CPHRLAPLSEGR+DENGHLQCSYHGWSF GCGSCTRIPQAA+ GPEAR
Sbjct:   67 IEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEAR 177
[Close]
BLAST of FC925064 vs. ExPASy Swiss-Prot
Match: CAO_DUNSA (Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.840e-15
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:   92 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 331
            WYP    + L+P +   F L G   VL+ D +S       D C HR  PLS G++  NGH+QC YHGW FDG G+CT++P
Sbjct:  134 WYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAP-TCIKDSCAHRACPLSLGKVI-NGHVQCPYHGWEFDGSGACTKMP 211
The following BLAST results are available for this feature:
BLAST of FC925064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PAO_ARATH3.007e-5280.18Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
CAO_DUNSA3.840e-1545.00Chlorophyllide a oxygenase, chloroplastic OS=Dunal... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YA21FM1 TF Citrus clementina cDNA clone KN0AAP3YA21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925064 ID=FC925064; Name=FC925064; organism=Citrus clementina; type=EST; length=361bp
GAGAAAAGACTTTAAAGAAGATTATGGATCATTAGTCGATGATGAGTATG
GTAAAGAGAGTTCGGATTCTAAGTTTTCTTGGAGCGATCATTGGTACCCA
GTTTCTTTAGTTGAAGATTTGGACCCGAACTTGCCAACAGCGTTTCAGCT
TCTTGGGAGAGACTTAGTTCTTTGGTTTGATAACAATTCTAATAAATGGG
TTGCATTTGATGACAAATGCCCTCATAGACTCGCCCCATTATCGGAAGGG
CGGATCGATGAAAATGGGCATTTGCAGTGTTCATACCATGGATGGTCTTT
TGACGGGTGTGGATCTTGCACTCGCATTCCCCAAGCAGCATCTGAAGGTC
CTGAAGCTCGT
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