FC925076

Overview
NameFC925076
Unique NameFC925076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1816 contig Ccv1_Contig1816:38..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP1B1_MOUSE (AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.648e-29
Identity = 77/189 (40.74%), Postives = 108/189 (57.14%), Query Frame = -1
Query:    6 PLPVVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGPLQV-PQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKDFPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAKLPRG 569
            P  V LPA   +GL+IS   T+Q G I   L   N +   +  F IQFN+N+FGLA A PLQV   + P  +    LP+    ++ +  P + LQVAVKN+   V+YF+   PLHV F EDG+M+R  FL TW+ + + NE      D  +N+ EA  ++L +SN+F +AKR    Q++ Y S KL  G
Sbjct:  716 PKAVWLPAMKAKGLEISGTFTRQAGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHVPLSPNQTVEISLPLNTVGSVLKMEPLNNLQVAVKNNID-VFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIANENEAQFQIRDCPLNT-EAASNKLQSSNIFTVAKRNVEGQDMLYQSLKLTNG 902          
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP1B1_HUMAN (AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.648e-29
Identity = 76/189 (40.21%), Postives = 107/189 (56.61%), Query Frame = -1
Query:    6 PLPVVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGPLQV-PQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKDFPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAKLPRG 569
            P  V LPA   +GL+IS   T+Q G I   L   N +   +  F IQFN+N+FGLA A PLQV   + P  +    LP+    ++ +  P + LQVAVKN+   V+YF+   PLH+ F EDG+M+R  FL TW+ + + NE      D  +N+ EA   +L +SN+F +AKR    Q++ Y S KL  G
Sbjct:  719 PKAVWLPAMKAKGLEISGTFTRQVGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHAPLSPNQTVEISLPLSTVGSVMKMEPLNNLQVAVKNNID-VFYFSTLYPLHILFVEDGKMDRQMFLATWKDIPNENEAQFQIRDCPLNA-EAASSKLQSSNIFTVAKRNVEGQDMLYQSLKLTNG 905          
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP1B1_RAT (AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.765e-29
Identity = 77/189 (40.74%), Postives = 107/189 (56.61%), Query Frame = -1
Query:    6 PLPVVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGPLQV-PQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKDFPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAKLPRG 569
            P  V LPA   +GL+IS   T+Q G I   L   N +   +  F IQFN+N+FGLA A PLQV   + P  +    LP+    ++ +  P + LQVAVKN+   V+YF+   PLHV F EDG+M+R  FL TW+ + + NE      D  +N+ EA   +L +SN+F +AKR    Q++ Y S KL  G
Sbjct:  722 PKAVWLPAMKAKGLEISGTFTRQVGSISMDLQLTNKALQVMTDFAIQFNRNSFGLAPAAPLQVHAPLSPNQTVEISLPLNTVGSVMKMEPLNNLQVAVKNNID-VFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIPNENEAQFQIRDCPLNT-EAASSKLQSSNIFTVAKRTVEGQDMLYQSLKLTNG 908          
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP2B1_RAT (AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.410e-26
Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = -1
Query:    6 PLPVVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGPLQV-PQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKDFPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAKLPRG 569
            P  V LPA   +GL+IS   T + G IY  ++F N +   +  F IQFNKN+FG+  + PL +   + P  S    LP+     + +  P + LQVAVKN+   V+YF+   PL+V F EDG+MER  FL TW+ + + NE+     +  +N+ +    +L  +N++ IAKR    Q++ Y S KL  G
Sbjct:  710 PKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHLNA-DTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNG 896          
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP2B1_MOUSE (AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.410e-26
Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = -1
Query:    6 PLPVVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGPLQV-PQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKDFPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAKLPRG 569
            P  V LPA   +GL+IS   T + G IY  ++F N +   +  F IQFNKN+FG+  + PL +   + P  S    LP+     + +  P + LQVAVKN+   V+YF+   PL+V F EDG+MER  FL TW+ + + NE+     +  +N+ +    +L  +N++ IAKR    Q++ Y S KL  G
Sbjct:  710 PKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHLNA-DTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNG 896          
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP2B1_HUMAN (AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.410e-26
Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = -1
Query:    6 PLPVVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGPLQV-PQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKDFPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAKLPRG 569
            P  V LPA   +GL+IS   T + G IY  ++F N +   +  F IQFNKN+FG+  + PL +   + P  S    LP+     + +  P + LQVAVKN+   V+YF+   PL+V F EDG+MER  FL TW+ + + NE+     +  +N+ +    +L  +N++ IAKR    Q++ Y S KL  G
Sbjct:  710 PKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHLNA-DTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNG 896          
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP2B1_BOVIN (AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.410e-26
Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = -1
Query:    6 PLPVVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGPLQV-PQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKDFPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAKLPRG 569
            P  V LPA   +GL+IS   T + G IY  ++F N +   +  F IQFNKN+FG+  + PL +   + P  S    LP+     + +  P + LQVAVKN+   V+YF+   PL+V F EDG+MER  FL TW+ + + NE+     +  +N+ +    +L  +N++ IAKR    Q++ Y S KL  G
Sbjct:  710 PKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHLNA-DTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNG 896          
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP1B1_BOVIN (AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.410e-26
Identity = 70/189 (37.04%), Postives = 105/189 (55.56%), Query Frame = -1
Query:    6 PLPVVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGPLQV-PQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVKNSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKDFPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAKLPRG 569
            P  V LPA   +GL+IS   T + G IY  ++F N +   +  F IQFNKN+FG+  + PL +   + P  S    LP+     + +  P + LQVAVKN+   V+YF+   PL+V F EDG+MER  FL TW+ + + NE+     +  +N+ +    +L  +N++ IAKR    Q++ Y S KL  G
Sbjct:  724 PKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHLNA-DTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNG 910          
BLAST of FC925076 vs. ExPASy Swiss-Prot
Match: AP1B_DICDI (AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 59/187 (31.55%), Postives = 97/187 (51.87%), Query Frame = -1
Query:   18 VVLPASTGQGLQISAQLTQQDGQIYYSLSFENNSQIPLDGFMIQFNKNTFGLAAAGP-LQVPQVQPGTSASTLLPMVMFQNLSQGPPSSLLQVAVK-NSQQPVWYFNDKAPLHVFFTEDGRMERGNFLETWRSLHDSNEVSKD----FPDIVVNSVEATLDRLDASNMFFIAKRKHAKQEVFYFSAK 560
            VV      Q +QIS   T+  G+I   L+  N SQ  +  F IQF +N+FG++ A   L    ++ G S    +P+     +S  P + ++ +A+     Q  +YF    PL    TE GR++R ++L  W+S+ +SNE S +     P + V+S+   L RL++ N+F I ++K   QE+ + S K
Sbjct:  713 VVFGGDRSQAIQISGAFTRFQGRINLELNLLNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQIS-NPLNPVIDMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHVDVDSI---LRRLNSKNIFEIVRKKAPNQEISFLSCK 895          
The following BLAST results are available for this feature:
BLAST of FC925076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AP1B1_MOUSE3.648e-2940.74AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1... [more]
AP1B1_HUMAN3.648e-2940.21AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1... [more]
AP1B1_RAT4.765e-2940.74AP-1 complex subunit beta-1 OS=Rattus norvegicus G... [more]
AP2B1_RAT8.410e-2637.04AP-2 complex subunit beta OS=Rattus norvegicus GN=... [more]
AP2B1_MOUSE8.410e-2637.04AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1... [more]
AP2B1_HUMAN8.410e-2637.04AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1... [more]
AP2B1_BOVIN8.410e-2637.04AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 P... [more]
AP1B1_BOVIN8.410e-2637.04AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1... [more]
AP1B_DICDI2.712e-1631.55AP-1 complex subunit beta OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YP16FM1 TF Citrus clementina cDNA clone KN0AAP1YP16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925076 ID=FC925076; Name=FC925076; organism=Citrus clementina; type=EST; length=776bp
GCCCCCCCTCTAGGGAGTTTAGCAGAGAAGTAGAATACTTCCTGTTTTGC
ATGCTTGCGCTTTGCAATAAAGAACATGTTTGATGCATCCAGCCGATCTA
GAGTTGCTTCCACACTGTTCACCACAATGTCTGGGAAGTCCTTCGAAACC
TCATTTGAATCATGAAGGGACCTCCACGTCTCAAGGAAGTTTCCACGCTC
CATTCTCCCATCCTCAGTGAAGAACACATGCAATGGGGCTTTGTCATTGA
AGTACCACACTGGCTGTTGACTGTTTTTCACAGCTACTTGTAAAAGTGAG
CTTGGGGGACCTTGAGACAAATTCTGGAACATAACCATAGGCAGAAGAGT
ACTAGCTGATGTCCCAGGTTGCACTTGTGGAACCTGCAAGGGTCCAGCGG
CTGCAAGACCAAATGTATTCTTGTTGAACTGAATCATGAACCCATCGAGT
GGAATTTGGGAGTTGTTTTCAAACGATAAACTGTAATATATTTGACCATC
CTGTTGTGTCAGCTGTGCACTGATTTGTAAACCTTGGCCAGTTGATGCTG
GTAGTACAACAGGCAATGGAGGGCCACTAGGAGTAGCAAGCTGATCAACA
GGAACAATAGCATTATTGTCAAGGCCTATCAGATCACCAAGCAAATCTGG
CACTGGAGCAGCAGGTGAAGGTGGTGCACGGGCTGGTTGCCTTGCAGCAG
AATATGGAACATTACTTGAACTAGTTGGAGATACACCACCATCAGCTGCG
TGAGCAGATGATTCAGAATATCCTGT
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