FC925098

Overview
NameFC925098
Unique NameFC925098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:13..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 431.409 bits (1108), Expect = 3.005e-120
Identity = 202/220 (91.82%), Postives = 211/220 (95.91%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEATT 706
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM KYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVLLSVRCKD NSHHAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA   PG+AF+ A T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 1.823e-117
Identity = 203/219 (92.69%), Postives = 209/219 (95.43%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEAT 703
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD NS+HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA   PGRAFL ++
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 2.381e-117
Identity = 202/218 (92.66%), Postives = 209/218 (95.87%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEA 700
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD+NSH+AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA   PGRAF++A
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 404.445 bits (1038), Expect = 3.934e-112
Identity = 192/218 (88.07%), Postives = 201/218 (92.20%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEA 700
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA   PG AFL A
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 8.763e-112
Identity = 191/218 (87.61%), Postives = 201/218 (92.20%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEA 700
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA   PG AFL A
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 3.330e-111
Identity = 188/217 (86.64%), Postives = 205/217 (94.47%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLE 697
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRI+DVG KK+ VDEFPFCVHLVSWEKENVSSEALEA RIACNKYM K+AGKD FHLRVRVHPFHVLR NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR +D++S+HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+   PG+AFL+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGAKKRLVDEFPFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 3.682e-110
Identity = 192/218 (88.07%), Postives = 201/218 (92.20%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEA 700
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+   PG+AFL A
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 397.897 bits (1021), Expect = 3.682e-110
Identity = 192/218 (88.07%), Postives = 201/218 (92.20%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEA 700
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+   PG+AFL A
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 4.809e-110
Identity = 191/218 (87.61%), Postives = 202/218 (92.66%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEA 700
            MGRRPARCYRQIKNKP PKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWE+ENVSSEALEAARI CNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +  PG+AFL+A
Sbjct:    1 MGRRPARCYRQIKNKPCPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218          
BLAST of FC925098 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 397.127 bits (1019), Expect = 6.280e-110
Identity = 190/219 (86.76%), Postives = 204/219 (93.15%), Query Frame = 2
Query:   47 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQPPPGRAFLEAT 703
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+  PG+AFL  T
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
The following BLAST results are available for this feature:
BLAST of FC925098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_VITRI3.005e-12091.8260S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_SOLME1.823e-11792.6960S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_EUPES2.381e-11792.6660S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL102_ARATH3.934e-11288.0760S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH8.763e-11287.6160S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_PINTA3.330e-11186.6460S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL102_ORYSJ3.682e-11088.0760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI3.682e-11088.0760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL10_MAIZE4.809e-11087.6160S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL101_ORYSJ6.280e-11086.7660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB06FM1 TF Citrus clementina cDNA clone KN0AAP3YB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925098 ID=FC925098; Name=FC925098; organism=Citrus clementina; type=EST; length=841bp
CCGAGCAGAAAGTGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGG
GAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCA
AAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGA
TGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACC
TCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCC
CGTATCGCTTGCAACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTTT
CCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAGA
TGCTTTCGTGTGCTGGGGCTGATCGGCTCCAGACTGGAATGAGGGGTGCT
TTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTT
GCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCAGGAGGCCC
TTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGC
AGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTGAGGTGGAA
GTCGGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCTTCTCGGAT
GTCATGGTCCTTTGGCTCAACCGCCACCTGGAAGAGCTTTCCTGGAAGCA
ACAACCTAAGATATTTACTGTCTCCAAATAGCAGAGCTGTGACTACTGTC
TAGTTTATTATTTTCCATTTCGTACCTTTTTCCCAGTGAACTGGATTTCT
CAAGTTGAAGTGACATGTTTTATTTGGTTTAACTATGTGAT
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