FC925104

Overview
NameFC925104
Unique NameFC925104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3764 contig Ccv1_Contig3764:1..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT12_ARATH (Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.576e-19
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  538 SKLEDDE--PVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 759
            S L DDE  P F SR+EIER SPSR+DGID   ET LR SYC F++ LG RL++PQ TI TA+  CHRFF+R+SHA
Sbjct:   21 SNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFCHRFFLRQSHA 96          
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT13_ARATH (Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 759
            + SR+EIERFSPSRKDGID ++E+ LR SYC F+Q LG++L + Q TI  AMV+CHRF++R+SHA
Sbjct:   35 YFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHRFYMRQSHA 99          
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.670e-18
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  502 EVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 759
            E   S   +    K E+    +  R EIE  SPSR DGID  +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF R+SHA
Sbjct:   13 ESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHA 98          
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT11_ORYSJ (Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.848e-18
Identity = 39/65 (60.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 759
            +++RDE+ER SPSR+DG+ A +E  LR +YC+FI+++GLRL+LPQ TI TA +LCHRF++R+SHA
Sbjct:   10 YVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHA 74          
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 40/65 (61.54%), Postives = 54/65 (83.08%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 759
            + SR EIE  SPSR+DGID  +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRF++R+SHA
Sbjct:   37 YFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHA 101          
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.082e-17
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  502 EVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 759
            E   S   +    K ++    +  R EIE  SPSR D ID  +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF+R+SHA
Sbjct:   13 ESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHA 98          
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.149e-17
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 759
            + SR EIE  S SR+DGID  +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRFF+R+SHA
Sbjct:   38 YFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHA 102          
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT12_ORYSJ (Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 34/65 (52.31%), Postives = 53/65 (81.54%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHA 759
            + +R+E+E+FSPSRKDGI  + E+ +R  YC+FI+++G+RL+LPQ TI TA++ CHRF++ +S A
Sbjct:   19 YFTREELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLA 83          
BLAST of FC925104 vs. ExPASy Swiss-Prot
Match: CCT11_ARATH (Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.984e-12
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRS 753
            + +R+ IE+ SPSR DGI+   ET  R+SY +F+Q LG RL  PQ TI TA+VLC RFF R+S
Sbjct:    8 YNTREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQS 70          
The following BLAST results are available for this feature:
BLAST of FC925104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CCT12_ARATH2.576e-1963.16Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=... [more]
CCT13_ARATH7.496e-1963.08Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=... [more]
CCT15_ARATH1.670e-1851.16Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=... [more]
CCT11_ORYSJ2.848e-1860.00Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT14_ORYSJ4.859e-1861.54Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT14_ARATH1.082e-1748.84Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=... [more]
CCT13_ORYSJ3.149e-1761.54Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT12_ORYSJ5.028e-1552.31Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT11_ARATH3.984e-1255.56Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CY... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YC23FM1 TF Citrus clementina cDNA clone KN0AAP8YC23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925104 ID=FC925104; Name=FC925104; organism=Citrus clementina; type=EST; length=764bp
CTCTTCACGCGTCCTTTCTCTTGCTTTCGAATTAATAAAAACCTGAAGGA
AACCCCTTCTCGATTTCAATCACGGCGTTTTCTTGATCTCGTTCTCCGTT
AATCATCTGCAGGTACAATGTCTTTTGCACGGAATTATCGCCAACAAGGG
GGCACCTACCATGATAGACATTGGTCTTCTTTCAATAGAGACAACTGCAG
CAGCAATAGCTACAATAACTACAACTACAACCGAAGCTGGAATGACAATC
ACGTTCGAAATTATAACAATTTCCACAGCTATTCAGGGAAATTCAGGGAG
CACTATCAGTATGATAATCCTAGTTACATCACAGCTAGTTATGTTCAACC
TAACAATGCGCCGTCTTTCAAAAGGAGGAAATTTTCAGCCTCTGCATGGG
GAGACAGTGCAAGGAACTATTTGCAAGTGCCTAATGAATATGAGACTGCC
GTTTCATCATCCAACAAGACTTTGGTTCCACCTGTTTCCATTTCCAATAT
TGAGGTGTCTACATCTATGAGCTGTAAACGTGACCGGTCAAAATTGGAGG
ATGATGAGCCAGTGTTTATGTCGAGGGATGAGATTGAGAGATTCTCCCCT
TCGAGAAAAGATGGCATTGATGCACTACGTGAAACACATTTGCGATATTC
ATATTGTGCATTCATTCAAAATCTTGGATTGCGGCTTGAGTTGCCACAAA
CCACTATTGGCACTGCCATGGTTCTGTGCCATCGTTTTTTTGTTCGGCGA
TCACATGCTTGCCA
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