FC925112

Overview
NameFC925112
Unique NameFC925112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig188 contig Ccv1_Contig188:12..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_RICCO (Acyl-CoA-binding protein OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.549e-40
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 3
Query:   36 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGVSA 305
            MGL+E+FEE+AEKAKTLPE+TTNENKLILYGLYKQATVGPVNT+RPGMFNMRDRAKWDAWKAVEGKS EEAMSDYITKVKQL  E+  SA
Sbjct:    1 MGLKEDFEEHAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGMFNMRDRAKWDAWKAVEGKSTEEAMSDYITKVKQLLGEAAASA 90          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_FRIAG (Acyl-CoA-binding protein OS=Fritillaria agrestis GN=ACABP PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.336e-36
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 3
Query:   36 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEES 293
            M L+EEFEE+A KAKTLPEST+NENKLILYGLYKQ+TVGPV+T RPGMF+ R+RAKWDAWKAVEGKSKEEAM DYITKVKQL EES
Sbjct:    1 MALKEEFEEHAVKAKTLPESTSNENKLILYGLYKQSTVGPVDTGRPGMFSPRERAKWDAWKAVEGKSKEEAMGDYITKVKQLLEES 86          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_GOSHI (Acyl-CoA-binding protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.374e-35
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 3
Query:   36 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGVS 302
            MGL+EEFEE+AEK KTLP + +N++ LILYGLYKQATVGPVNT+RPGMFNMR++ KWDAWKAVEGKSKEEAM DYITKVKQL E +G S
Sbjct:    1 MGLKEEFEEHAEKVKTLPAAPSNDDMLILYGLYKQATVGPVNTSRPGMFNMREKYKWDAWKAVEGKSKEEAMGDYITKVKQLFEAAGSS 89          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_BRANA (Acyl-CoA-binding protein OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.047e-32
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 3
Query:   36 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGVSA 305
            MGL+E+FEE+AEK K L  S +NE+ LILYGLYKQATVGPV T+RPGMF+M++RAKWDAWKAVEGKS +EAMSDYITKVKQL E    SA
Sbjct:    1 MGLKEDFEEHAEKVKKLTASPSNEDLLILYGLYKQATVGPVTTSRPGMFSMKERAKWDAWKAVEGKSTDEAMSDYITKVKQLLEAEASSA 90          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP6_ARATH (Acyl-CoA-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=ACBP6 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.263e-31
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 3
Query:   36 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGVSA 305
            MGL+EEFEE+AEK  TL E  +NE+ LILYGLYKQA  GPV+T+RPGMF+M++RAKWDAWKAVEGKS EEAM+DYITKVKQL E +   A
Sbjct:    1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVDTSRPGMFSMKERAKWDAWKAVEGKSSEEAMNDYITKVKQLLEVAASKA 90          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_HUMAN (Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.427e-19
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 3
Query:   45 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGV 299
            Q EFE+ AE+ + L    ++E  L +YG YKQATVG +NT RPGM +   +AKWDAW  ++G SKE+AM  YI KV++L+++ G+
Sbjct:    3 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKYGI 87          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_HYPDU (Putative acyl-CoA-binding protein OS=Hypsibius dujardini PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.551e-19
Identity = 42/89 (47.19%), Postives = 63/89 (70.79%), Query Frame = 3
Query:   36 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGVS 302
            M ++E+F+  AE+ K L  S ++   L LY LYKQAT+G VNT+RPGM  ++++AKWDAW   +G  KE+A   Y+ KVK+L E++G++
Sbjct:    1 MSVEEQFKTSAEQVKKLKSSPSDTELLELYSLYKQATIGDVNTDRPGMLYLKEKAKWDAWNGRKGLGKEQAQELYVKKVKELVEKNGLA 89          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_PIG (Acyl-CoA-binding protein OS=Sus scrofa GN=DBI PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.862e-19
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 3
Query:   45 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGV 299
            Q EFE+ AE+ K L     ++  L +Y  YKQATVG +NT RPG+ +++ +AKWDAW  ++G SKE+AM  YI KV++L+++ G+
Sbjct:    3 QAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGILDLKGKAKWDAWNGLKGTSKEDAMKAYINKVEELKKKYGI 87          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_CHAVI (Acyl-CoA-binding protein OS=Chaetophractus villosus GN=DBI PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 3
Query:   45 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGV 299
            Q EF++ AE+ K L     ++  L +Y  YKQATVG +NT RPGM + + +AKWDAW  ++G SKE+AM  YI KV++L+++ G+
Sbjct:    3 QAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYGI 87          
BLAST of FC925112 vs. ExPASy Swiss-Prot
Match: ACBP_BOVIN (Acyl-CoA-binding protein OS=Bos taurus GN=DBI PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.682e-18
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 3
Query:   45 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEESGV 299
            Q EF++ AE+ K L     +E  L +Y  YKQATVG +NT RPGM + + +AKWDAW  ++G SKE+AM  YI KV++L+++ G+
Sbjct:    3 QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKKKYGI 87          
The following BLAST results are available for this feature:
BLAST of FC925112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ACBP_RICCO4.549e-4087.78Acyl-CoA-binding protein OS=Ricinus communis PE=3 ... [more]
ACBP_FRIAG2.336e-3684.88Acyl-CoA-binding protein OS=Fritillaria agrestis G... [more]
ACBP_GOSHI3.374e-3578.65Acyl-CoA-binding protein OS=Gossypium hirsutum PE=... [more]
ACBP_BRANA2.047e-3274.44Acyl-CoA-binding protein OS=Brassica napus PE=3 SV... [more]
ACBP6_ARATH2.263e-3172.22Acyl-CoA-binding domain-containing protein 6 OS=Ar... [more]
ACBP_HUMAN4.427e-1949.41Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE... [more]
ACBP_HYPDU7.551e-1947.19Putative acyl-CoA-binding protein OS=Hypsibius duj... [more]
ACBP_PIG9.862e-1947.06Acyl-CoA-binding protein OS=Sus scrofa GN=DBI PE=1... [more]
ACBP_CHAVI1.288e-1847.06Acyl-CoA-binding protein OS=Chaetophractus villosu... [more]
ACBP_BOVIN1.682e-1848.24Acyl-CoA-binding protein OS=Bos taurus GN=DBI PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB22FM1 TF Citrus clementina cDNA clone KN0AAP3YB22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925112 ID=FC925112; Name=FC925112; organism=Citrus clementina; type=EST; length=517bp
CTCAAATCTCACATAAAAGCAAAAGAAAGGGGAAAATGGGTTTGCAGGAG
GAATTTGAGGAGTATGCTGAGAAAGCAAAGACCCTGCCAGAGTCAACAAC
AAACGAAAACAAGCTTATCCTTTATGGTCTCTACAAGCAAGCCACTGTTG
GACCAGTAAACACAAACAGACCTGGAATGTTTAACATGAGGGACAGAGCC
AAGTGGGATGCATGGAAGGCTGTCGAAGGGAAATCAAAGGAGGAAGCAAT
GAGTGACTACATTACCAAGGTAAAGCAGTTGCAGGAGGAATCTGGTGTTT
CTGCCTGACCTTCCGCTGTATGCTTATCTTCCAAATCTCATGATTCGGAA
AAGTCAAAATAAGTTGAAAAAGGTTTAAGCTGTTTGCAAACTGGTTCTAT
TGATGTTACATCTGAATTATGTCTCTGTTTAAATTATGTATGATATGTAC
TTTGGTTAAAGTCCATTGAAATGATTAAGTAGTTTGTGTTATCTTGGGAA
AAAAAAAAAAAAAAAAA
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