FC925113

Overview
NameFC925113
Unique NameFC925113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13527 contig Ccv1_Contig13527:47..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.021e-50
Identity = 95/127 (74.80%), Postives = 113/127 (88.98%), Query Frame = 1
Query:    7 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNT 387
            MA+ +SP ASQL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT
Sbjct:    1 MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNT 126          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 6.730e-50
Identity = 96/128 (75.00%), Postives = 113/128 (88.28%), Query Frame = 1
Query:    7 MASVSSPMASQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNT 387
            MA+ +SPMASQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT
Sbjct:    1 MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNT 128          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.958e-49
Identity = 98/129 (75.97%), Postives = 112/129 (86.82%), Query Frame = 1
Query:    7 MASVSSPMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTE 390
            MA+ +SPMASQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE
Sbjct:    1 MAATTSPMASQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTE 126          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.955e-42
Identity = 84/123 (68.29%), Postives = 98/123 (79.67%), Query Frame = 1
Query:   25 PMASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEI 393
            PMASQ+  S       +   PRG+SG+        R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT +
Sbjct:    8 PMASQVMKS-----GLACSKPRGMSGASLT-----RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPV 120          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.120e-20
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  181 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEI 393
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEV 73          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.910e-20
Identity = 39/71 (54.93%), Postives = 59/71 (83.10%), Query Frame = 1
Query:  181 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEI 393
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDV 74          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_CYAME (Photosystem I reaction center subunit XI OS=Cyanidioschyzon merolae GN=psaL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.910e-20
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  187 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEI 393
            I+P N DPF+G L TPI SS L   YLS LP YR  VSP LRG+E+G+AHG+ L+GPFV+ GPLRNT+I
Sbjct:    5 IKPYNNDPFVGHLATPINSSSLTRAYLSQLPIYRRGVSPFLRGLEIGMAHGYFLIGPFVQLGPLRNTDI 73          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.910e-20
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  187 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEI 393
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT++
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDL 73          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_ODOSI (Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.258e-20
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  187 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEI 393
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLRN++I
Sbjct:    5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRNSDI 73          
BLAST of FC925113 vs. ExPASy Swiss-Prot
Match: PSAL_PHATR (Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum GN=psaL PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.258e-20
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  187 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEI 393
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLR++EI
Sbjct:    5 IKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRDSEI 73          
The following BLAST results are available for this feature:
BLAST of FC925113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA3.021e-5074.80Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH6.730e-5075.00Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL1.958e-4975.97Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU3.955e-4268.29Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH1.120e-2060.56Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_THEEB1.910e-2054.93Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_CYAME1.910e-2063.77Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_CYACA1.910e-2056.52Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_ODOSI3.258e-2063.77Photosystem I reaction center subunit XI OS=Odonte... [more]
PSAL_PHATR7.258e-2063.77Photosystem I reaction center subunit XI OS=Phaeod... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB23FM1 TF Citrus clementina cDNA clone KN0AAP3YB23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925113 ID=FC925113; Name=FC925113; organism=Citrus clementina; type=EST; length=430bp
TCTCAAATGGCTTCTGTTTCTTCTCCAATGGCCAGCCAGCTCAAAAGTAG
CTTTACTTCACCAGTTTCCAGGAGCCTGCTTACTCCAAGGGGTATCTCTG
GATCTCCATTCAGGGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCATTGTC
AAAGCTATCCAATCTGAAAAGCCAACTTACCAAGTTATTCAGCCAATCAA
TGGTGATCCATTCATTGGAAGCTTGGAGACTCCAATTACATCAAGTCCAT
TGATTGCATGGTACCTCTCAAATCTACCAGCTTATCGGACGGCAGTCAGC
CCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCCATGGATTCCTCCTTGT
GGGTCCATTTGTTAAGGCAGGGCCATTGAGAAACACAGAAATAGCAGGAC
CAGCAGGGTCATTGGCAGCTGGTGGCCTTG
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