FC925114

Overview
NameFC925114
Unique NameFC925114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1943 contig Ccv1_Contig1943:1..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925114 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.208e-58
Identity = 114/166 (68.67%), Postives = 133/166 (80.12%), Query Frame = 2 
Query:   86 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALDKVEKQIKKPLMRNDNKGM 583
            MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +AL+KVEK IKKPL+R+D KGM
Sbjct:    1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGM 166
The following BLAST results are available for this feature:
BLAST of FC925114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH2.208e-5868.67Probable ATP synthase 24 kDa subunit, mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YB24FM1 TF Citrus clementina cDNA clone KN0AAP3YB24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925114 ID=FC925114; Name=FC925114; organism=Citrus clementina; type=EST; length=584bp
AATCAGAATCCCTTACGAACCCTAAACACGCTAAAAGCAGAAACCTCCAA
GAAGAAGAACAACAGCTGAGGTTCTGATTCCGATCATGGCATTTGCTTCT
CGCCTCGCATCCAAATCCAAACAGCTGTGTAGTAGCCAAGTGATACTGCA
ACGGCAGCATGCAATTTCAGTTCGTTTCTTTGCAAACGAAGCTGCTCCTC
AGGCTCTTAAAGGAGATGAGATGTTGAAAAACATCTTTTTGGATGTTAAG
AAGAAATTTGAGACTGCCTTGGGGGTACTCCGGAAGGAGAAGATCACCAT
TGCTCCAGAGGATCCTGCTGCTGTTTCTCAGTATGCTAATGTCATGAAGA
CTGTCAGAGAGAAGGCAGACTTGTTCTCAGAATCCCAACGAATAGCGTAT
ACCATTGAAACACGAACAGCAGGAATTCCAGATGCTCGAACATATTTGTT
GACGCTCAAGGAAATAAGGGAGAGGAGAGGTCTCATTGATGAGCATGGTG
CTGAGGCTATGATGATGGATGCATTGGATAAAGTTGAAAAACAAATTAAA
AAGCCTCTTATGAGGAATGATAACAAGGGGATGG
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