FC925119

Overview
NameFC925119
Unique NameFC925119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925119_ssr571 microsatellite FC925119_ssr571:571..582. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4660 contig Ccv1_Contig4660:18..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.005e-59
Identity = 118/147 (80.27%), Postives = 127/147 (86.39%), Query Frame = 2
Query:   44 MASVVLRNPNSKRIVPFSSQIYSCCRGSL----SISDAFSANETSATRCGPSVNPWWRSMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            MASVVLRNP+SKR+VPFSSQIYS C  S+    SIS +   ++ S++  G S   +WRSMATFTR K HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK
Sbjct:    1 MASVVLRNPSSKRLVPFSSQIYSRCGASVTSSYSISHSIGGDDLSSSTFGTS--SFWRSMATFTRNKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 145          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.673e-36
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 2
Query:  218 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            F RTK HVN+GTIGHVDHGKTTLTAAIT +LA+EGKAKA  ++EIDKAPEEK+RGITI TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    6 FERTKPHVNIGTIGHVDHGKTTLTAAITTILAKEGKAKAFNYEEIDKAPEEKERGITINTAHVEYETENRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_CLOK5 (Elongation factor Tu OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.491e-36
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 2
Query:  206 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            S   F RTK HVN+GTIGHVDHGKTTLTAAIT VLA+EGKA A  +DEIDKAPEEK+RGITI TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    2 SKEKFERTKPHVNIGTIGHVDHGKTTLTAAITMVLAKEGKASATKYDEIDKAPEEKERGITINTAHVEYETEVRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.559e-36
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKTTLTAAITKVLA +G+A+  AFD+ID APEE++RGITIATAHVEYET KRHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQIDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.559e-36
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKTTLTAAITKVLA +G+A+  AFD+ID APEE++RGITIATAHVEYET KRHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQIDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSL (Elongation factor Tu OS=Geobacter sulfurreducens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.559e-36
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKTTLTAAITKVLAE G+A+   FD+ID APEE++RGITIAT+HVEYET KRHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLAERGQAEFRGFDQIDNAPEERERGITIATSHVEYETEKRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.559e-36
Identity = 70/85 (82.35%), Postives = 80/85 (94.12%), Query Frame = 2
Query:  218 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            F R+K HVNVGTIGHVDHGKTTLTAAITKVLA++G A+ +A+D+IDKAPEE++RGITIATAHVEY+T KRHYAHVDCPGHADYVK
Sbjct:    6 FERSKPHVNVGTIGHVDHGKTTLTAAITKVLAQKGGAQFLAYDQIDKAPEERERGITIATAHVEYQTEKRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPS (Elongation factor Tu OS=Clostridium perfringens (strain SM101 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.954e-36
Identity = 72/89 (80.90%), Postives = 78/89 (87.64%), Query Frame = 2
Query:  206 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            S A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA+ G A+A  +DEIDKAPEEK+RGITI TAHVEYETA RHYAHVDCPGHADYVK
Sbjct:    2 SKAKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQAGGAEAFKYDEIDKAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPE (Elongation factor Tu OS=Clostridium perfringens GN=tufA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.954e-36
Identity = 72/89 (80.90%), Postives = 78/89 (87.64%), Query Frame = 2
Query:  206 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            S A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA+ G A+A  +DEIDKAPEEK+RGITI TAHVEYETA RHYAHVDCPGHADYVK
Sbjct:    2 SKAKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQAGGAEAFKYDEIDKAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_CLOP1 (Elongation factor Tu OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.954e-36
Identity = 72/89 (80.90%), Postives = 78/89 (87.64%), Query Frame = 2
Query:  206 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            S A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA+ G A+A  +DEIDKAPEEK+RGITI TAHVEYETA RHYAHVDCPGHADYVK
Sbjct:    2 SKAKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQAGGAEAFKYDEIDKAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVK 90          
The following BLAST results are available for this feature:
BLAST of FC925119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTM_ARATH5.005e-5980.27Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
EFTU_CLOAB2.673e-3683.53Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_CLOK53.491e-3682.02Elongation factor Tu OS=Clostridium kluyveri (stra... [more]
EFTU_PELPD4.559e-3682.76Elongation factor Tu OS=Pelobacter propionicus (st... [more]
EFTU_GEOUR4.559e-3682.76Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_GEOSL4.559e-3681.61Elongation factor Tu OS=Geobacter sulfurreducens G... [more]
EFTU_ANADE4.559e-3682.35Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
EFTU_CLOPS5.954e-3680.90Elongation factor Tu OS=Clostridium perfringens (s... [more]
EFTU_CLOPE5.954e-3680.90Elongation factor Tu OS=Clostridium perfringens GN... [more]
EFTU_CLOP15.954e-3680.90Elongation factor Tu OS=Clostridium perfringens (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD10FM1 TF Citrus clementina cDNA clone KN0AAP8YD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925119 ID=FC925119; Name=FC925119; organism=Citrus clementina; type=EST; length=833bp
CTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCGGAATCAATGGCTT
CGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGTGCCGTTTTCATCC
CAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCTCCGACGCTTTCTC
CGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCTGTTAACCCCTGGT
GGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCACGTGAATGTGGGA
ACAATTGGACACGTTGATCATGGGAAGACTACACTTACTGCTGCGATTAC
CAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATTGCCTTTGATGAAA
TTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCAACGGCC
CATGTAGAGTATGAGACTGCTAAGCGTCACTATGCACATGTTGACTGTCC
TGGACATGCTGATTATGTTAAAGTAAGAAGTAAATATTCAATGCTGCCGG
GTAAATTTAGTTGTTAGAGCGATCCTCTGGGAAATTGATGTATTCTCAGT
GAAAAAAAAAAAGAGAAACAAAAGAAAGAAAGAAAAATTAAAAAGGCAAA
AATGATGTTAAGAGAATTCGAAGCTGCTGAGGTGTTAGTATGTTCCCTCA
ACAGCAACCTAATTTTATGGATAAAGTTTTACATTTGAAGCATAGCAGAA
GCAAAAGATTTAGCATGCTAACATTTTAAAGGACCTGCATTCATGTCTTG
CACGGTTTAGATATTTCATTTTTTTTCTTGAAGTTTTGTCCCATCTAATT
TTCTAAACTCATATTCATTCCAGAGATGTCAAC
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