FC925147

Overview
NameFC925147
Unique NameFC925147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig477 contig Ccv1_Contig477:47..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI2_HUMAN (ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.211e-19
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  464 QEFQYFVVIDFEATCDKD-KNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWL 730
            Q F Y +VIDFE+TC  D K+ + QEIIEFP+V++++ TGQ+++ FQ YV+P  + +LS+FC +LTGI+Q QVD GV L   L +  KW+
Sbjct:   32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWI 121          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI2_XENLA (ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.401e-18
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  464 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLE 733
            Q F+Y ++IDFE+TC KD     QEIIEFP+V+++   G++E+ F TYV+P  + +LSDFC +LTGI Q QVD GV L   L + + W++
Sbjct:   33 QFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDFCTELTGINQQQVDDGVPLKICLSQFNSWIQ 122          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI3_MOUSE (ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  455 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGI 745
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L+ FC +LTGI Q  VD   +L + L R D+W+  +G+
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGL 233          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI3_HUMAN (ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  455 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGI 745
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L+ FC +LTGI Q  VD   +L + L R D+W+  +G+
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGL 233          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI3_BOVIN (ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.951e-18
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  455 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGI 745
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L+ FC +LTGI Q  VD   +L + L R D+W+  +G+
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGL 233          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI2_MOUSE (ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.450e-17
Identity = 42/90 (46.67%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  464 QEFQYFVVIDFEATCDKD-KNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWL 730
            Q + Y +V+DFE+TC  D K+    EIIEFP+V++++ TG++E+ F  YV+P  + +LS+FC +LTGI+Q+QVD GV L   L +  KW+
Sbjct:   32 QLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEFCTELTGIKQVQVDEGVPLKICLSQFCKWI 121          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI2_DANRE (ERI1 exoribonuclease 2 OS=Danio rerio GN=eri2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.814e-16
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  464 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEN 736
            Q F + ++IDFE+TC ++K+   QEIIEFP+V++S  +G +E+ F +YV+P    +LS FC +LTGI Q QVD    L   L R  +WL +
Sbjct:   30 QRFSFLIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSAFCTELTGITQDQVDSAPPLHVVLSRFSRWLRS 120          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI1_HUMAN (3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 6.506e-16
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  452 DFQPQEFQYFVVIDFEATCDKDKNP-YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENK 739
            +F    + Y  +IDFEATC++   P +  EIIEFP V++++ T ++E  FQ YVRP  N  LSDFC  LTGI Q QVDR  T  + L +   W++ K
Sbjct:  121 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLK 217          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI1_MOUSE (3'-5' exoribonuclease 1 OS=Mus musculus GN=Eri1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  470 FQYFVVIDFEATCDKDKNP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNHQLCCL 769
            + Y  +IDFEATC++  NP  +  EIIEFP V++++ T ++E  FQ YVRP  N  LS+FC  LTGI Q QVDR     + L +  +W+++K +      C+
Sbjct:  123 YDYICIIDFEATCEEG-NPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFCIGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCI 223          
BLAST of FC925147 vs. ExPASy Swiss-Prot
Match: ERI1_RAT (3'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Eri1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  470 FQYFVVIDFEATCDKDKNP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNHQLCCL 769
            + Y  +IDFEATC++  NP  +  EIIEFP V++++ + ++E  FQ YVRP  N  LS+FC  LTGI Q QVDR     + L +  +W+++K +      C+
Sbjct:  123 YDYICIIDFEATCEEG-NPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFCIGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCI 223          
The following BLAST results are available for this feature:
BLAST of FC925147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ERI2_HUMAN8.211e-1951.11ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=... [more]
ERI2_XENLA1.401e-1848.89ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 P... [more]
ERI3_MOUSE6.951e-1845.36ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=... [more]
ERI3_HUMAN6.951e-1845.36ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=... [more]
ERI3_BOVIN6.951e-1845.36ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 ... [more]
ERI2_MOUSE3.450e-1746.67ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=... [more]
ERI2_DANRE3.814e-1645.05ERI1 exoribonuclease 2 OS=Danio rerio GN=eri2 PE=2... [more]
ERI1_HUMAN6.506e-1645.363'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE... [more]
ERI1_MOUSE9.395e-1542.163'-5' exoribonuclease 1 OS=Mus musculus GN=Eri1 PE... [more]
ERI1_RAT2.093e-1441.183'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Er... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC22FM1 TF Citrus clementina cDNA clone KN0AAP3YC22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925147 ID=FC925147; Name=FC925147; organism=Citrus clementina; type=EST; length=809bp
CAAAAGGTGGCTCTTAAAGAGAAAGATCTGATGTACTTGATGGTGGATCT
TAATTATACAAAAGATCATGATGGCCCTTGAACATAATGAAGCTATGCAG
AGGATGTGTGAGGCATCCTTGAAAGGCCTCCAGAGCAGGGGAATCCGTTG
CAACCTGCAGTATAATAATGGGAATTCCGTTGAACTTAAAGATGACACCA
TTGTCCATCCAGGTGGGGATGCCGGAGAATCAATTCATCAGTTGAGCAGT
GAGTTTGTGGAATATTCAAATGAATTTTATAACAACCCCACCTACCAACA
TGATTTTGGTTCATGGTCCACCTTCTATCCTGACTCTCAAAAGGTGCATC
ACTGCCAAATGAATTCTTTTGAGAGCCAATTTTATCCCTTTCCTGTGGAA
AATCGGTTTCAGTTTGCTCCATACAATATGCTCACACCAGCTCACCCATA
TGATTTCCAGCCTCAAGAATTTCAGTATTTTGTGGTAATAGACTTTGAGG
CTACTTGCGACAAGGACAAGAATCCTTATCCCCAGGAGATAATCGAGTTT
CCATCTGTCATTGTGAGTAGTGTAACTGGTCAACTGGAAGCATGTTTTCA
GACATATGTGCGGCCGACTTGCAATCAACTACTGAGTGATTTCTGCAAGG
ATCTGACAGGTATCCAGCAAATTCAGGTGGACAGAGGTGTTACTCTAAGC
GAGGCTTTACTTAGGCATGACAAATGGCTTGAGAATAAGGGCATAAAAAA
CCACCAACTTTGCTGTCTTGACGTGGTCAAATTGGGGATTGTCGGGGTAA
GGTTGGAAA
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