FC925154

Overview
NameFC925154
Unique NameFC925154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig778 contig Ccv1_Contig778:9..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925154 vs. ExPASy Swiss-Prot
Match: SRP14_ARATH (Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 1
Query:   19 MGLLQPDPFLNELTSMFERNRDKGSVWVTVXXXXXXXXXXXXXMATAGEPVEYRCLIRATDGKKKISTTVGAKDHQRFQASYATLLKAHMAAL 297
            M LLQ DPFLNELTSMFE++++KGSVWVT+             +++ GE +EYRCLIRATDGKK +ST+VGAKDHQRFQASYAT+LKAHM AL
Sbjct:    1 MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRATDGKKTVSTSVGAKDHQRFQASYATILKAHMTAL 93          
BLAST of FC925154 vs. ExPASy Swiss-Prot
Match: SRP14_ORYSJ (Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica GN=SRP14 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.785e-25
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   19 MGLLQPDPFLNELTSMFERNRDKGSVWVTVXXXXXXXXXXXXXMATAGEPVEYRCLIRATDGKKKISTTVGAKDHQRFQASYATLLKAHMAAL 297
            M +LQPDPFL+ELTSM+ER+ +KGSVWVT+             MA  GE VEYRCL+RATDGKK I T + AK++ +FQASYAT+LKAHM AL
Sbjct:    1 MVVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRATDGKKNICTALSAKEYLKFQASYATVLKAHMHAL 93          
BLAST of FC925154 vs. ExPASy Swiss-Prot
Match: SRP14_MOUSE (Signal recognition particle 14 kDa protein OS=Mus musculus GN=Srp14 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   19 MGLLQPDPFLNELTSMFERNRDKGSVWVTVXXXXXXXXXXXXXMATAG-EPVEYRCLIRATDGKKKISTTVGAKDHQRFQASYATLLKAHMAAL 297
            M LL+ + FL ELT +F++ R  GSV++T+              +  G EP E +CL+RATDGK+KIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    1 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRATDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGL 94          
BLAST of FC925154 vs. ExPASy Swiss-Prot
Match: SRP14_PONAB (Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   19 MGLLQPDPFLNELTSMFERNRDKGSVWVTVXXXXXXXXXXXXXMATAG-EPVEYRCLIRATDGKKKISTTVGAKDHQRFQASYATLLKAHMAAL 297
            M LL+ + FL ELT +F++ R  GSV++T+                 G EP + +CL+RATDGKKKIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94          
BLAST of FC925154 vs. ExPASy Swiss-Prot
Match: SRP14_MACFA (Signal recognition particle 14 kDa protein OS=Macaca fascicularis GN=SRP14 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   19 MGLLQPDPFLNELTSMFERNRDKGSVWVTVXXXXXXXXXXXXXMATAG-EPVEYRCLIRATDGKKKISTTVGAKDHQRFQASYATLLKAHMAAL 297
            M LL+ + FL ELT +F++ R  GSV++T+                 G EP + +CL+RATDGKKKIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94          
BLAST of FC925154 vs. ExPASy Swiss-Prot
Match: SRP14_HUMAN (Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   19 MGLLQPDPFLNELTSMFERNRDKGSVWVTVXXXXXXXXXXXXXMATAG-EPVEYRCLIRATDGKKKISTTVGAKDHQRFQASYATLLKAHMAAL 297
            M LL+ + FL ELT +F++ R  GSV++T+                 G EP + +CL+RATDGKKKIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94          
BLAST of FC925154 vs. ExPASy Swiss-Prot
Match: SRP14_CANFA (Signal recognition particle 14 kDa protein OS=Canis familiaris GN=SRP14 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   19 MGLLQPDPFLNELTSMFERNRDKGSVWVTVXXXXXXXXXXXXXMATAG-EPVEYRCLIRATDGKKKISTTVGAKDHQRFQASYATLLKAHMAAL 297
            M LL+ + FL ELT +F++ R  GSV++T+              +  G EP + +CL+RATDGKKKIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94          
BLAST of FC925154 vs. ExPASy Swiss-Prot
Match: SRP14_BOVIN (Signal recognition particle 14 kDa protein OS=Bos taurus GN=SRP14 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   19 MGLLQPDPFLNELTSMFERNRDKGSVWVTVXXXXXXXXXXXXXMATAG-EPVEYRCLIRATDGKKKISTTVGAKDHQRFQASYATLLKAHMAAL 297
            M LL+ + FL ELT +F++ R  GSV++T+              +  G EP + +CL+RATDGKKKIST V +K+  +FQ +Y+ LL+A+M  L
Sbjct:    1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94          
The following BLAST results are available for this feature:
BLAST of FC925154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SRP14_ARATH2.661e-2966.67Signal recognition particle 14 kDa protein OS=Arab... [more]
SRP14_ORYSJ1.785e-2561.29Signal recognition particle 14 kDa protein OS=Oryz... [more]
SRP14_MOUSE9.188e-1442.55Signal recognition particle 14 kDa protein OS=Mus ... [more]
SRP14_PONAB2.047e-1342.55Signal recognition particle 14 kDa protein OS=Pong... [more]
SRP14_MACFA2.047e-1342.55Signal recognition particle 14 kDa protein OS=Maca... [more]
SRP14_HUMAN2.047e-1342.55Signal recognition particle 14 kDa protein OS=Homo... [more]
SRP14_CANFA7.778e-1342.55Signal recognition particle 14 kDa protein OS=Cani... [more]
SRP14_BOVIN7.778e-1342.55Signal recognition particle 14 kDa protein OS=Bos ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YE07FM1 TF Citrus clementina cDNA clone KN0AAP8YE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925154 ID=FC925154; Name=FC925154; organism=Citrus clementina; type=EST; length=646bp
CGAACATAAACGTCATTAATGGGTCTTTTGCAACCGGATCCGTTTCTAAA
TGAGTTGACAAGCATGTTTGAGCGCAACAGGGACAAGGGCTCCGTTTGGG
TTACTGTCAAACGATCGTCAATGAAGTCTAAATCACAAAAGAATAAAATG
GCAACTGCTGGAGAACCAGTTGAGTACAGATGCCTTATTCGTGCTACTGA
TGGCAAGAAAAAGATTTCTACTACGGTAGGGGCAAAGGATCACCAGCGCT
TTCAAGCTTCTTATGCAACTCTTTTGAAGGCACACATGGCTGCTCTAAAG
AAGAGGGAGAGGAAAGACAAGAAGAAGGGTGTAGATGGAGATCGGAAAGA
TGGAGCAGGTTCGACGAAGAAGCCAAAGAGAGTGTGAACAAGTTCGTACC
TCCATCTCAGAGAAACCATTGGAAACCTTTGTGTCTTCTCATATATTCGG
AGAAAGATTCTTTCAGTTTTGAACAATTAGAGGATAAGGAAATGGGTTTT
TGTTTGACTGCCCCGTTGAAGATGACATTCGATTCTCTTATAGGTTGCTT
ATGATCTGGAAAAATTTGCAAATGATTAAATTTTTTGGCTGGCCTCACCG
TATATTGATTTGTGATTGAAATTTCTGCAAAAAAAAAAAAAAAAAA
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