FC925165

Overview
NameFC925165
Unique NameFC925165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925165_ssr116 microsatellite FC925165_ssr116:116..127. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:50..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.389e-88
Identity = 164/216 (75.93%), Postives = 176/216 (81.48%), Query Frame = 2
Query:   83 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            M KD+E +        FSAKDY DPPPAPLID EEL KWS YRAVIAEFIA            IGYK Q+D  +NT    C GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSLIRA+LY++AQCLGAICG G VK FQ SYY RYGGGANEL+DGY+KGTGLGAEIIGTFVLVYTVFSATDPKR+AR+SH+PVLAPLPIGF
Sbjct:    1 MAKDIEASAPEGGE--FSAKDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGF 214          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.369e-88
Identity = 160/214 (74.77%), Postives = 172/214 (80.37%), Query Frame = 2
Query:   83 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            M KD++V          +A+DY DPPPAP  D EEL KW  YRAVIAEF+A            IGYK+QTD       CGGVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFL RKVSL+R +LY+VAQCLGAICGCGFVKAFQ SYY RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR+AR+SHVPVLAPLPIGF
Sbjct:    1 MAKDLDVNESGPP----AARDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGF 210          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.420e-87
Identity = 163/216 (75.46%), Postives = 175/216 (81.02%), Query Frame = 2
Query:   83 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            M KD+E +        FSAKDY DPPPAPLID EEL +WS YRAVIAEFIA            IGYK QTD + +     CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSL+RALLY++AQCLGAICG G VK FQ +YY RYGGGANEL+DGY+KGTGL AEIIGTFVLVYTVFSATDPKRSAR+SHVPVLAPLPIGF
Sbjct:    1 MAKDIEASGPEAGE--FSAKDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 214          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.467e-87
Identity = 160/215 (74.42%), Postives = 172/215 (80.00%), Query Frame = 2
Query:   83 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNL-NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            M KDVE          +SAKDYHDPPPAPLID +EL KWS YRA IAEFIA            IGYK Q+D  +    +C GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSL+RALLYM+AQC GAICG G  K FQKS+YNRYGGG N ++DGYNKGT LGAEIIGTFVLVYTVFSATDPKR+AR+SHVPVLAPLPIGF
Sbjct:    1 MAKDVEQVTEQGE---YSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGF 212          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.467e-87
Identity = 155/198 (78.28%), Postives = 167/198 (84.34%), Query Frame = 2
Query:  131 FSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            FS KDY DPPP PL D  ELGKWSFYRA+IAEFIA            IGYKSQTDP LN DQC GVG+LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL L RKV+L+RA++YMVAQCLGAICG   VKAFQ +Y+ RYGGGAN L+DGY+ GTG+ AEIIGTFVLVYTVFSATDPKRSAR+SHVPVLAPLPIGF
Sbjct:   12 FSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 209          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.951e-87
Identity = 161/214 (75.23%), Postives = 169/214 (78.97%), Query Frame = 2
Query:   83 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            M KDVE          F  +DY DPPPAP ID  EL KWSFYRAVIAEF+A            IGYK Q+D +     CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSL RALLY++AQCLGAICG GFVKAFQ SYY RYGGGAN LADGY+ GTGL AEIIGTFVLVYTVFSATDPKRSAR+SHVPVLAPLPIGF
Sbjct:    1 MAKDVEAVPGEG----FQTRDYQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 210          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.300e-86
Identity = 160/214 (74.77%), Postives = 168/214 (78.50%), Query Frame = 2
Query:   83 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            M KDVE          F  +DY DPPP P  D +EL KWS YRAVIAEF+A            IGYK Q+D       CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSLIRA+LYMVAQCLGAICG GFVKAFQ SYY+RYGGGAN LADGYN GTGL AEIIGTFVLVYTVFSATDPKR+AR+SHVPVLAPLPIGF
Sbjct:    1 MAKDVE------GPEGFQTRDYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGF 208          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.697e-86
Identity = 162/216 (75.00%), Postives = 174/216 (80.56%), Query Frame = 2
Query:   83 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            MGKD EV         F+AKDY DPPPAPLID  ELG WS YRAVIAEFIA            IGYK QTD + +     CGGVG+LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSL+RA+LY+VAQCLGAICG G VKAFQ +Y+NRYGGGAN LA GY+KGTGL AEIIGTFVLVYTVFSATDPKR+AR+SHVPVLAPLPIGF
Sbjct:    1 MGKD-EVMESGGAAGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGANTLAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGF 215          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 2.217e-86
Identity = 160/216 (74.07%), Postives = 175/216 (81.02%), Query Frame = 2
Query:   83 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            MGKD +V         F+AKDY DPPPAPLID  ELG WS YRAVIAEFIA            IGYK QTD + +     CGGVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RALLY+VAQCLGAICG G VKAFQ +Y++RYGGGAN LA GY++GTGLGAEIIGTFVLVYTVFSATDPKR+AR+SHVPVLAPLPIGF
Sbjct:    1 MGKD-DVIESGAGGGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGF 215          
BLAST of FC925165 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.895e-86
Identity = 159/200 (79.50%), Postives = 168/200 (84.00%), Query Frame = 2
Query:  131 FSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARNSHVPVLAPLPIGF 724
            FSAKDY DPPPAPLID +EL KWS YRAVIAEFIA            IGYK QTD   +     CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSL+RALLY++AQCLGAICG G VK FQ +YY RYGGGANEL+DGY+KGTGL AEIIGTFVLVYTVFSATDPKRSAR+SHVPVLAPLPIGF
Sbjct:   16 FSAKDYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 215          
The following BLAST results are available for this feature:
BLAST of FC925165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PIP22_ORYSJ1.389e-8875.93Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP24_ARATH2.369e-8874.77Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP24_MAIZE3.420e-8775.46Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP27_MAIZE4.467e-8774.42Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP25_ARATH4.467e-8778.28Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP21_ARATH9.951e-8775.23Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP22_ARATH1.300e-8674.77Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ORYSJ1.697e-8675.00Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE2.217e-8674.07Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP23_MAIZE2.895e-8679.50Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YD05FM1 TF Citrus clementina cDNA clone KN0AAP3YD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925165 ID=FC925165; Name=FC925165; organism=Citrus clementina; type=EST; length=724bp
TAAACTCTGTAGCTAACACAACAGTCGTAGCTCTTGTTTCTCCCTCTCGT
TTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATGTTGAA
GTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGACTACCA
CGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAGTGGT
CTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTTTCTT
TATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATCCCAA
CTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCTTGGG
CCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTATTTCT
GGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGGCGCAA
GGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTGGGTG
CAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTACAAC
AGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGGGCAC
CGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACTGTTT
TCTCTGCCACTGATCCTAAGAGGAGCGCAAGAAACTCCCATGTTCCGGTC
TTGGCACCACTCCCCATTGGGTTT
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