FC925181

Overview
NameFC925181
Unique NameFC925181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1955 contig Ccv1_Contig1955:1..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925181 vs. ExPASy Swiss-Prot
Match: SRRM1_PONAB (Serine/arginine repetitive matrix protein 1 OS=Pongo abelii GN=SRRM1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.872e-36
Identity = 84/171 (49.12%), Postives = 109/171 (63.74%), Query Frame = 3
Query:   27 MSGGFFRGTSADQDTRFSNKQAKLLKTQKFASELDHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLEGKEVNGKEVQISLTGFME-KHTAKFMKELWTLLLSAQKNASGVPQQFXXXXXXXXXXXXXXXXXIA---------NEIQKKEKESRELDKERSRN 509
            M  GFFRGTSA+QD RFSNKQ KLLK  KFA  L+  VDM+KV ++V+KPWI  RVTE+LGFED+V+I FI+  LE K  + K +QI+LTGF+  K+  +FM ELW LLLSAQ+N +G+P  F                 +A         ++  K+EKES    +ERSR+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRS 171          
BLAST of FC925181 vs. ExPASy Swiss-Prot
Match: SRRM1_MOUSE (Serine/arginine repetitive matrix protein 1 OS=Mus musculus GN=Srrm1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.872e-36
Identity = 84/171 (49.12%), Postives = 109/171 (63.74%), Query Frame = 3
Query:   27 MSGGFFRGTSADQDTRFSNKQAKLLKTQKFASELDHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLEGKEVNGKEVQISLTGFME-KHTAKFMKELWTLLLSAQKNASGVPQQFXXXXXXXXXXXXXXXXXIA---------NEIQKKEKESRELDKERSRN 509
            M  GFFRGTSA+QD RFSNKQ KLLK  KFA  L+  VDM+KV ++V+KPWI  RVTE+LGFED+V+I FI+  LE K  + K +QI+LTGF+  K+  +FM ELW LLLSAQ+N +G+P  F                 +A         ++  K+EKES    +ERSR+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASLKKQDEDKDKRDKEEKESSREKRERSRS 171          
BLAST of FC925181 vs. ExPASy Swiss-Prot
Match: SRRM1_HUMAN (Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.872e-36
Identity = 84/171 (49.12%), Postives = 109/171 (63.74%), Query Frame = 3
Query:   27 MSGGFFRGTSADQDTRFSNKQAKLLKTQKFASELDHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLEGKEVNGKEVQISLTGFME-KHTAKFMKELWTLLLSAQKNASGVPQQFXXXXXXXXXXXXXXXXXIA---------NEIQKKEKESRELDKERSRN 509
            M  GFFRGTSA+QD RFSNKQ KLLK  KFA  L+  VDM+KV ++V+KPWI  RVTE+LGFED+V+I FI+  LE K  + K +QI+LTGF+  K+  +FM ELW LLLSAQ+N +G+P  F                 +A         ++  K+EKES    +ERSR+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRS 171          
BLAST of FC925181 vs. ExPASy Swiss-Prot
Match: SRRM1_CHICK (Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.085e-35
Identity = 80/162 (49.38%), Postives = 108/162 (66.67%), Query Frame = 3
Query:   27 MSGGFFRGTSADQDTRFSNKQAKLLKTQKFASELDHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLEGKEVNGKEVQISLTGFME-KHTAKFMKELWTLLLSAQKNASGVPQQFXXXXXXXXXXXXXXXXXIANEIQKKEKESRELDKERSRN 509
            M  GFFRGTSA+QD RFSNKQ KLLK  KFA  L+  VDM+KV ++V+KPWI  RVTE+LGFED+V+I FI+  LE K  + K +QI+LTGF+  K+  +FM ELW LLLSAQ+N +G+P  F                 +A+ ++K++++  + DKE   N
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPTAFLELKKEEIKQRQIEQEKLAS-MKKQDEDKEKRDKEDKDN 161          
BLAST of FC925181 vs. ExPASy Swiss-Prot
Match: YJQ5_SCHPO (PWI domain-containing protein C825.05c OS=Schizosaccharomyces pombe GN=SPCC825.05c PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29
Identity = 58/132 (43.94%), Postives = 92/132 (69.70%), Query Frame = 3
Query:   36 GFFRGTSADQDTRFSNKQAKLLKTQKFASELDHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLE-------------GKEVNGKEVQISLTGFMEKHTAKFMKELWTLLLSAQKNASGVPQQF 392
            GF++G +A+Q+T F+    KL+++ KF +  D  VDM KV ++V+KPWIATR+ EL+GFEDEV+INF+YG+LE                ++ ++VQ++LTGF+E +   F +ELW+L++SA +N  G+P++F
Sbjct:    3 GFYKGVAAEQETLFTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDEVVINFVYGMLEEAVEASKTSDSQNESTLDPRKVQLNLTGFLESNATAFTEELWSLIISASQNQYGIPEKF 134          
The following BLAST results are available for this feature:
BLAST of FC925181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SRRM1_PONAB4.872e-3649.12Serine/arginine repetitive matrix protein 1 OS=Pon... [more]
SRRM1_MOUSE4.872e-3649.12Serine/arginine repetitive matrix protein 1 OS=Mus... [more]
SRRM1_HUMAN4.872e-3649.12Serine/arginine repetitive matrix protein 1 OS=Hom... [more]
SRRM1_CHICK1.085e-3549.38Serine/arginine repetitive matrix protein 1 OS=Gal... [more]
YJQ5_SCHPO7.534e-2943.94PWI domain-containing protein C825.05c OS=Schizosa... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YD14FM1 TF Citrus clementina cDNA clone KN0AAP3YD14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925181 ID=FC925181; Name=FC925181; organism=Citrus clementina; type=EST; length=742bp
TCCTGTCTCCTCCAAAACCCTAGAAAATGTCGGGCGGCTTTTTCCGGGGT
ACGTCGGCCGATCAAGACACGCGGTTCTCGAACAAACAAGCCAAGCTCTT
GAAAACGCAGAAATTTGCATCTGAGTTGGACCACCTGGTGGACATGACAA
AAGTGAAGATGGATGTTATGAAACCGTGGATTGCTACTAGGGTGACTGAG
TTACTTGGATTTGAAGATGAAGTGCTCATCAACTTCATATATGGTCTTCT
TGAGGGGAAGGAAGTGAATGGTAAGGAGGTTCAGATATCGCTCACTGGTT
TCATGGAGAAACATACTGCAAAGTTCATGAAGGAGCTTTGGACACTTCTT
CTCAGTGCTCAGAAGAATGCAAGTGGTGTTCCACAACAGTTCTTGGATGC
CAAGGAAGAAGAGGCAAGAAAGAAAAAGTTGGAGGCAGATCGGATAGCAA
ATGAAATTCAGAAAAAGGAGAAGGAAAGCAGAGAACTTGACAAAGAGAGA
TCGAGGAATATGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCT
CAAAACTACTGTAGGACGGTGCAGTTGAGATGAAGACCACTAACGCTGCC
TCGGTTCTAGACTCAAAGACTATGCTGGAAAAGGATTCGAGTAGCTATCC
CAAGGATAAAAAGGAAGCTGGTGAGAAGAATGGTGTGAGAGGAAGGAGCA
GGTTTTCAAGATCTCCACTTCCAGTTGCTCATTCCCCTTTAT
back to top