FC925182

Overview
NameFC925182
Unique NameFC925182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig366 contig Ccv1_Contig366:453..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.399e-60
Identity = 107/133 (80.45%), Postives = 121/133 (90.98%), Query Frame = 1
Query:    1 PGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFA 399
            PGGYVYQKAYLEFFCS +KL  LV+KSKA P IT+MAVNK  NW +N  ++DVNAVTWGVFPAKE+IQPT+VDPASFKVWKDEAFEIWSRSWA+LYPE D SRKLLEEV++SYYLVSLVDN+YINGD+F+VFA
Sbjct:  460 PGGYVYQKAYLEFFCSKDKLDTLVEKSKAFPSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQPTIVDPASFKVWKDEAFEIWSRSWANLYPEDDPSRKLLEEVKNSYYLVSLVDNNYINGDIFSVFA 592          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.310e-58
Identity = 107/135 (79.26%), Postives = 117/135 (86.67%), Query Frame = 1
Query:    1 PGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFADL 405
            P GYVYQKAYLEFFCS EKL A+V+K KALP IT+MAVNK   W +N  Q DVNAVTWGVFPAKEIIQPT+VDPASF VWKDEAFE WSRSWA+LYPE D SR LLEEV++SYYLVSLV+NDYINGD+F VFADL
Sbjct:  460 PVGYVYQKAYLEFFCSKEKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVDPASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDIFAVFADL 594          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.438e-54
Identity = 96/135 (71.11%), Postives = 114/135 (84.44%), Query Frame = 1
Query:    1 PGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFADL 405
            PGGYVYQKAYLEFFCS EKL  L++KSKA P +T++AVNK+G   +N+    VNAVTWGVFP KEI+QPTVVD ASF VWKDEAFEIWS+ WA L+PEGDSSR++L++VQ SY+LVSLVDNDYINGDLF  F ++
Sbjct:  460 PGGYVYQKAYLEFFCSKEKLDQLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQPTVVDSASFMVWKDEAFEIWSKGWACLFPEGDSSREILDKVQKSYFLVSLVDNDYINGDLFAAFKEI 594          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.081e-52
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = 1
Query:    1 PGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVF 396
            PGGYVYQKAYLEFFC+ EKL  L++K KA P +T++AVNK+G   +N++   VNAVTWGVFP KEIIQPTVVD ASF VWKDEAFEIW+R W  ++PEGDSSR+LLE+VQ +YYLVSLVDNDY+ GDLF  F
Sbjct:  460 PGGYVYQKAYLEFFCAKEKLDQLIEKIKAFPSLTYIAVNKDGETFSNISPNAVNAVTWGVFPGKEIIQPTVVDHASFMVWKDEAFEIWTRGWGCMFPEGDSSRELLEKVQKTYYLVSLVDNDYVQGDLFAAF 591          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.490e-30
Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    4 GGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 369
            GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDND+
Sbjct:  504 GGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 7.490e-30
Identity = 62/123 (50.41%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    4 GGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 369
            GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDND+
Sbjct:  504 GGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    4 GGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 369
            GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDN++
Sbjct:  503 GGYVFQKAYLEFFTSRETVEALLQVLKTYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    4 GGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 369
            GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDN++
Sbjct:  503 GGYVFQKAYLEFFTSRETVEALLQVLKKYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.751e-27
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 PGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYING-DLFTVF 396
            P GYV+QK Y+EFF  P  L  L +  K L  +++   NK G+   N      NAVTWGVFP +EIIQPT+V+  SF  WKDEA+ +    WA+ Y     SRKLL  +   ++L  +VDND+ NG  LF VF
Sbjct:  453 PNGYVFQKPYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNGDLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSL-GMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDFQNGQSLFDVF 584          
BLAST of FC925182 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.945e-26
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 PGGYVYQKAYLEFFCSPE---KLTALVDKSKALPFITFMAVNKEGNW-KANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 369
            PGGY YQKAYLE F + E   KL  ++++   +  + + A+NK+  + K N  +T   AVTWGVFP  EI QPTVVDP SF+ W+DEA+++W   W   YP+   S  +++ V   + LV+LVDND+
Sbjct:  519 PGGYCYQKAYLECFMTAELSDKLIQIIEREFPVR-VNYHAINKDSTFDKTNSEETTPIAVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQWGDFYPKESKSYGVIKAVHDEFRLVTLVDNDF 644          
The following BLAST results are available for this feature:
BLAST of FC925182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR1_ARATH1.399e-6080.45Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR2_ARATH1.310e-5879.26Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR_ORYSJ7.438e-5471.11Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_MAIZE4.081e-5270.45Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_MACFA7.490e-3050.41Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_HUMAN7.490e-3050.41Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_MOUSE3.717e-2948.78Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_BOVIN3.717e-2948.78Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR1_SCHPO7.751e-2745.86Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR_CAEEL2.945e-2644.88Probable methylenetetrahydrofolate reductase OS=Ca... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YD15FM1 TF Citrus clementina cDNA clone KN0AAP3YD15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925182 ID=FC925182; Name=FC925182; organism=Citrus clementina; type=EST; length=587bp
CCAGGAGGATATGTTTATCAGAAAGCATATCTAGAGTTTTTCTGCTCACC
AGAGAAGTTGACTGCACTTGTTGACAAAAGCAAAGCTCTTCCATTCATAA
CCTTCATGGCTGTCAACAAAGAAGGGAACTGGAAAGCCAATGTTAATCAA
ACTGATGTGAATGCCGTAACTTGGGGGGTCTTCCCAGCCAAGGAGATTAT
CCAACCGACTGTTGTTGACCCTGCCAGCTTCAAGGTGTGGAAGGATGAGG
CATTCGAAATTTGGTCAAGATCATGGGCTTCATTGTACCCCGAGGGAGAC
TCATCAAGAAAATTGCTCGAAGAGGTGCAGAGCAGCTATTATTTGGTCAG
CTTGGTGGATAATGATTACATCAATGGGGATCTTTTTACTGTTTTTGCCG
ATCTCTAGGTTAAGCTGCTGTACTCCATGGAATTACAACCTGATTTCATC
AATGGTCATCTTGTACCCTCACTGAAGCCATTTGAAGTGTTGCCTTCTCT
CAAGTTAATTTCAATTGAAATTTATCCAAAATTACAAGCTTACTGATTGT
ATTAATAAGATGATAGGGATTTTGATACCTCCCTGAT
back to top