FC925183

Overview
NameFC925183
Unique NameFC925183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1956 contig Ccv1_Contig1956:1..346. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.267e-52
Identity = 101/115 (87.83%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVES          ATRQVLSEYGN+SSACVLFILDEMRKKSVEEAKAT GEGLDWGVLFG+GPG
Sbjct:  262 GLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPG 376
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.346e-49
Identity = 93/115 (80.87%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE           ATRQVLS+YGN+SSACVLFILDEMRKKS+EE KAT GEGLDWGVLFG+GPG
Sbjct:  267 GLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPG 381
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.225e-49
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE+          ATRQVLSEYGN+SSACVLFILDEMRKK  EE +AT GEGLDWGVLFG+GPG
Sbjct:  264 GLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPG 378
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.225e-49
Identity = 92/115 (80.00%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE           ATRQVLS+YGN+SSACVLFILDEMRKKS+EE KAT G+GLDWGVLFG+GPG
Sbjct:  266 GLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPG 380
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.986e-48
Identity = 92/115 (80.00%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE+          ATRQVLSEYGN+SSACVLFILDEMRK   EE +AT GEGLDWGVLFG+GPG
Sbjct:  264 GLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPG 378
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.681e-47
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGN+SSACVLFILDEMRKKS+EE K + GEGL+WGVLFG+GPG
Sbjct:  262 GLTFHLLKDVPGLISKNIEKSLVEAFTPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSIEEGKGSTGEGLEWGVLFGFGPG 376
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.681e-47
Identity = 90/115 (78.26%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPG+ISKNIEKSL+EAFAPLGISDWNS+FWIAHPGGPAILDQVES          ATR VLSEYGN+SSACVLFILDEMR+ S+E  K T GEGL+WGVLFG+GPG
Sbjct:  262 GLTFHLLKDVPGIISKNIEKSLAEAFAPLGISDWNSLFWIAHPGGPAILDQVESKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRRNSLEGGKVTTGEGLEWGVLFGFGPG 376
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.681e-47
Identity = 91/115 (79.13%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE           ATR VLSEYGN+SSACVLFILDEMRKK  EE  AT GEGL+WGVLFG+GPG
Sbjct:  264 GLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPG 378
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.867e-47
Identity = 90/115 (78.26%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           +TRQVLSEYGN+SSACVLFILDEMRK S +E  +T GEGLDWGVLFG+GPG
Sbjct:  262 GLTFHLLKDVPGLISKNIEKSLKEAFDPLGISDWNSVFWIAHPGGPAILDQVEEKLGLKPEKLRSTRQVLSEYGNMSSACVLFILDEMRKSSAKEGMSTTGEGLDWGVLFGFGPG 376
[Close]
BLAST of FC925183 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 3.745e-47
Identity = 89/115 (77.39%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 GLTFFLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNLSSACVLFILDEMRKKSVEEAKATPGEGLDWGVLFGYGPG 345
            GLTF LLKDVPGLISKNIEK+L++AF+PLGI+DWNSIFWIAHPGGPAILDQVE           ATR VLSEYGN+SSACVLFI+DEMRKKS E+  AT GEGLDWGVLFG+GPG
Sbjct:  265 GLTFHLLKDVPGLISKNIEKALTQAFSPLGITDWNSIFWIAHPGGPAILDQVELKLGLKEEKMRATRHVLSEYGNMSSACVLFIIDEMRKKSAEDGAATTGEGLDWGVLFGFGPG 379
The following BLAST results are available for this feature:
BLAST of FC925183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_CITSI2.267e-5287.83Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_PETCR2.346e-4980.87Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS2_RUTGR5.225e-4980.87Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHS2_DAUCA5.225e-4980.00Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHS1_RUTGR1.986e-4880.00Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHSY_VITVI1.681e-4778.26Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHSY_BETVE1.681e-4778.26Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHS3_RUTGR1.681e-4779.13Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_ANTMA2.867e-4778.26Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3... [more]
CHSY_CALCH3.745e-4777.39Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YD16FM1 TF Citrus clementina cDNA clone KN0AAP3YD16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925183 ID=FC925183; Name=FC925183; organism=Citrus clementina; type=EST; length=346bp
GGTCTCACTTTCTTTTTGCTTAAAGACGTCCCCGGCTTGATCTCAAAGAA
TATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTGGCATCAGCGACT
GGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCCGCAATTCTGGAC
CAAGTGGAGTCTAAACTGGGCCTCAAAGGGGAGAAGCTGAAGGCCACACG
TCAAGTGTTGAGTGAGTACGGTAACTTGTCAAGCGCTTGTGTCTTGTTCA
TCCTTGACGAGATGAGAAAGAAGTCTGTTGAGGAAGCGAAAGCCACCCCC
GGCGAAGGGCTTGATTGGGGTGTGCTGTTCGGGTACGGGCCGGGGC
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