FC925189

Overview
NameFC925189
Unique NameFC925189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1961 contig Ccv1_Contig1961:1..416. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.136e-36
Identity = 70/111 (63.06%), Postives = 83/111 (74.77%), Query Frame = 3
Query:   39 AALKLVSALVLCMLVTCPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            A  KL   + LCM V+    A AITCGQVT SLAPCI Y+RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  AGSI  +NPNNA GLP  CGV++PYKI+ ST+C+
Sbjct:    5 AVTKLALVVALCMAVSV---AHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCA 112          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.707e-36
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 3
Query:   39 AALKLVSALVLCMLVTCPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            A  KL   + LCM+V+ P+ AQAITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+I+ ST+C+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCA 114          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.686e-35
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 3
Query:   39 AALKLVSALVLCMLVTCPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            A  KL   + LCM+V+ P+ AQA+TCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNA  LP  CGV++PYKI+ ST+C+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCA 114          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.065e-33
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   39 AALKLVSALVLCMLVTCPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            A +KL   + LCM V+    A AITC QV+ +LAPCI Y+RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  AGS+  +NP NA  LP  CGV++PYKI+ ST+C+
Sbjct:    5 AVIKLALVVALCMAVSV---AHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCA 112          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.445e-32
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   42 ALKLVSALVLCMLVTCPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCSK 374
            A+ ++ A V CM+V  P + +A++CGQV+ SLAPCI YL  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NA   P  CGVSIPYKI+ STDCSK
Sbjct:    5 AMMVLCAGVTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSK 114          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.674e-32
Identity = 59/88 (67.05%), Postives = 72/88 (81.82%), Query Frame = 3
Query:  108 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            ITCGQV+ SLAPCI Y+R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYKI+ ST+C+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCA 88          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.002e-31
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 3
Query:   63 LVLCMLVTCPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKI+ ST+C+
Sbjct:    4 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCN 106          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.309e-31
Identity = 65/104 (62.50%), Postives = 77/104 (74.04%), Query Frame = 3
Query:   63 LVLCMLVTCPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV IPYKI+ ST+C+
Sbjct:   12 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCN 114          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.233e-31
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 3
Query:   63 LVLCMLVTCPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKI+ +T+C+
Sbjct:   12 LVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCN 114          
BLAST of FC925189 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.233e-31
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  108 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKINISTDCS 371
            ITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYKI+ ST+C+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCA 88          
The following BLAST results are available for this feature:
BLAST of FC925189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO5.136e-3663.06Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU6.707e-3660.36Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV9.686e-3557.66Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_PYRCO9.065e-3355.86Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP_HELAN3.445e-3258.56Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUAR7.674e-3267.05Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP4_LENCU1.002e-3162.50Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU1.309e-3162.50Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU2.233e-3161.54Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_PRUPE2.233e-3164.77Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YD22FM1 TF Citrus clementina cDNA clone KN0AAP3YD22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925189 ID=FC925189; Name=FC925189; organism=Citrus clementina; type=EST; length=416bp
GAAAAAGAAACCTTTAATCTCAGGAGAAATCTCAAATGGCTGCCCTCAAG
CTTGTTTCAGCTTTGGTTCTGTGCATGTTGGTGACTTGTCCCCTGAGTGC
TCAGGCCATAACATGTGGGCAGGTGACTGGCTCATTGGCACCATGCATCG
TTTACTTGAGATCGGGCGGCCCTATACCTGTGCCATGCTGCAACGGCGTC
AGGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATG
CAACTGCTTGAAGCAAGCCGCCGGATCAATCCCTAACCTCAACCCTAATA
ATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGCATTCCTTACAAGATC
AACATCTCCACTGACTGCTCTAAGTATATATGTCTTCAACTTATACTTAA
ATCTCCACATTATTAT
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