FC925208

Overview
NameFC925208
Unique NameFC925208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13860 contig Ccv1_Contig13860:110..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: GLSK_RAT (Glutaminase kidney isoform, mitochondrial OS=Rattus norvegicus GN=Gls PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  237 EEIKPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLER-GADVDPKDRWGSTPLGDAIYYKNHEVIKLLEKH 515
            + +K    L++ A   DV  ++    S +D+  RD D+RTALHVAA +G  EVV  LLE    +  PKDRW +TP+ +A+++ +H+V K+L+++
Sbjct:  554 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEACKVNPFPKDRWNNTPMDEALHFGHHDVFKILQEY 647          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: GLSK_HUMAN (Glutaminase kidney isoform, mitochondrial OS=Homo sapiens GN=GLS PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  237 EEIKPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLER-GADVDPKDRWGSTPLGDAIYYKNHEVIKLLEKH 515
            + +K    L++ A   DV  ++    S +D+  RD D+RTALHVAA +G  EVV  LLE    +  PKDRW +TP+ +A+++ +H+V K+L+++
Sbjct:  549 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEACKVNPFPKDRWNNTPMDEALHFGHHDVFKILQEY 642          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: GLSL_MOUSE (Glutaminase liver isoform, mitochondrial OS=Mus musculus GN=Gls2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  231 DGEEI--KPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLERGADVDP--KDRWGSTPLGDAIYYKNHEVIKLLEKHGAKPLMAPMHVKHARE 563
            +G E+  K    L++ A   DV  ++    S +D+  +D D+RTALHVAA +G  EVV  L+E    V+P  KDRWG+ PL DA+ + + EV+KLL+ +    L++    + A E
Sbjct:  478 EGGEVRNKTVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIE-ACKVNPFVKDRWGNIPLDDAVQFNHLEVVKLLQDYHDSYLLSETQAEAAAE 591          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: GLSL_HUMAN (Glutaminase liver isoform, mitochondrial OS=Homo sapiens GN=GLS2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  231 DGEEI--KPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLERGADVDP--KDRWGSTPLGDAIYYKNHEVIKLLEKH 515
            +G EI  K    L++ A   DV  ++    S +D+  +D D+RTALHVAA +G  EVV  L+E    V+P  KDRWG+ PL DA+ + + EV+KLL+ +
Sbjct:  478 EGAEIRNKTVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIE-ACKVNPFAKDRWGNIPLDDAVQFNHLEVVKLLQDY 575          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: GLSL_RAT (Glutaminase liver isoform, mitochondrial OS=Rattus norvegicus GN=Gls2 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  231 DGEEI--KPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLERGADVDP--KDRWGSTPLGDAIYYKNHEVIKLLEKHGAKPLMAPMHVKHARE 563
            +G E+  K    L++ A   DV  ++    S +D+  +D D+RTALHVAA +G  +VV  L+E    V+P  KDRWG+ PL DA+ + + EV+KLL+ +    +++    + A E
Sbjct:  478 EGGEVRNKTVVNLLFAAYSGDVSALRRFALSAVDMEQKDYDSRTALHVAAAEGHIDVVKFLIE-ACKVNPFVKDRWGNIPLDDAVQFNHLEVVKLLQDYHDSYMLSETQAEVAAE 591          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: SKOR_ARATH (Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  285 DVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLERGADVDPKDRWGSTPLGDAIYYKNHEVIKLLE 509
            D + +K LL +GID N +D D+RT LHVAA +GF  +   L+E  A+V  KDRWG+TPL +A+   N  +IKLLE
Sbjct:  657 DSDFLKRLLSNGIDPNSKDYDHRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLE 731          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: GORK_ARATH (Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  285 DVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLERGADVDPKDRWGSTPLGDAIYYKNHEVIKLLEKHGAKPLMAPMHVKHAREVPEYEID 584
            D + +K LL SG++ N  D D+RT LHVAA +G   +  +L+E GA V  KDRWG++PL +A    N ++IKLLE    K   + ++    RE+ E  I+
Sbjct:  640 DSDFLKRLLSSGMNPNSEDYDHRTPLHVAASEGLFLMAKMLVEAGASVISKDRWGNSPLDEARLCGNKKLIKLLE--DVKNAQSSIYPSSLRELQEERIE 737          

HSP 2 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  237 EEIKPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLERGADVDPKDRWGSTPLGDAIYYKNHEVIKLLEKHGA 521
            +E +   ++   A + D   +K L+ SG D N  D D R+ LH+AAC+G+ ++   L++ G DV+ KD++G TPL +A+      VI LL K GA
Sbjct:  527 QEAELALKVNSAAFQGDFYQLKSLIRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNLKDKFGHTPLFEAVKAGQEGVIGLLVKEGA 621          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: ANR54_BOVIN (Ankyrin repeat domain-containing protein 54 OS=Bos taurus GN=ANKRD54 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  222 LDDDGEEIKPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLERGADVDPKDRWGSTPLGDAIYYKNHEVIKLLEKHGAK 524
            L   G+E+    RL   AN  DVE +++LL+ G D    D   RTALH A+C G  ++V LLL+ GAD + +D  G+TPL  A    +  VI  L + GA+
Sbjct:  100 LGPTGKEVHALKRLRDSANANDVETVQQLLEEGTDPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHAPVITTLLRGGAR 200          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: ANR50_HUMAN (Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 3
Query:  207 AELNGLDDDGEEIKPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVA-----ACQGFTEVVSLLLERGADVDPKDRWGSTPLGDAIYYKNHEVIKLL----------EKHGAKPLMAPMHVKHAREV 566
            AE+N  D++G        L+  A     E ++ LLD G +VN  D+D RTAL VA     A +G   VVSLL++RGA+VD  D+ G TPL  A Y  + +V+ LL          + +G  PL+A   + HA  V
Sbjct:  668 AEVNKADNEGRTA-----LIAAAYMGHREIVEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHASVVSLLIDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDNNGRTPLLAAASMGHASVV 797          
BLAST of FC925208 vs. ExPASy Swiss-Prot
Match: GLS1_CAEEL (Putative glutaminase DH11.1 OS=Caenorhabditis elegans GN=DH11.1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 3
Query:  162 LLKQSSLAPDRERKEAELNGLDDDGEEIKPEFRLMYLANERDVEGIKELLDSGIDVNFRDIDNRTALHVAACQGFTEVVSLLLERG-ADVDPKDRWGSTPLGDAIYYKNHEVIKLLEKHGAKP 527
            L+  S++  D  R++        + + + P F   ++A   D+  ++ L   G D+N  D D+RT LH+AA +G+  ++  L+     DVD KDRWG TPL +A ++K+  V + LEK   +P
Sbjct:  461 LVHNSNIKSDPRRRDIR------ERDRLIPVF---HVARAGDLPTMRRLYMQGEDLNTSDHDDRTVLHIAATEGYETMIKFLVNVAKVDVDKKDRWGRTPLDEAKFFKHDHVSRFLEKAMKRP 574          
The following BLAST results are available for this feature:
BLAST of FC925208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GLSK_RAT5.892e-1439.36Glutaminase kidney isoform, mitochondrial OS=Rattu... [more]
GLSK_HUMAN5.892e-1439.36Glutaminase kidney isoform, mitochondrial OS=Homo ... [more]
GLSL_MOUSE2.924e-1338.26Glutaminase liver isoform, mitochondrial OS=Mus mu... [more]
GLSL_HUMAN6.514e-1342.42Glutaminase liver isoform, mitochondrial OS=Homo s... [more]
GLSL_RAT8.508e-1336.52Glutaminase liver isoform, mitochondrial OS=Rattus... [more]
SKOR_ARATH1.451e-1250.67Potassium channel SKOR OS=Arabidopsis thaliana GN=... [more]
GORK_ARATH1.451e-1241.00Potassium channel GORK OS=Arabidopsis thaliana GN=... [more]
ANR54_BOVIN2.095e-1140.59Ankyrin repeat domain-containing protein 54 OS=Bos... [more]
ANR50_HUMAN2.095e-1137.78Ankyrin repeat domain-containing protein 50 OS=Hom... [more]
GLS1_CAEEL2.737e-1132.52Putative glutaminase DH11.1 OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YE01FM1 TF Citrus clementina cDNA clone KN0AAP3YE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925208 ID=FC925208; Name=FC925208; organism=Citrus clementina; type=EST; length=795bp
AAGTGTGATCTCTTCTTAATCGTCTCTCTTCAAATATCTCATATTATAGA
TCTCCTCCAATTCTAGTTTAAGCACAGTTTTATTTTCAACAATTAAAGAA
AAAACAAAAGAAATATATTCAGCCAGAGAGTATGGAGACGAAGGTTCCTG
TGAGGACGACATTATTGAAGCAGTCGTCGTTGGCGCCGGATCGCGAGCGG
AAGGAGGCGGAGCTAAACGGCTTAGATGACGACGGTGAGGAAATTAAACC
GGAGTTCAGGCTGATGTACTTAGCAAATGAACGTGACGTGGAAGGAATCA
AGGAGCTCTTGGATTCTGGCATCGATGTCAACTTTCGAGATATCGATAAC
CGCACAGCTCTCCATGTGGCCGCCTGCCAAGGCTTCACCGAAGTTGTTAG
CTTGTTGCTCGAACGTGGCGCCGACGTTGACCCCAAAGACCGCTGGGGAA
GCACCCCTCTTGGAGATGCTATATATTACAAAAACCATGAGGTGATCAAA
CTCCTAGAGAAACATGGAGCAAAGCCTCTGATGGCTCCAATGCATGTTAA
ACATGCTCGTGAAGTCCCGGAATATGAAATTGACCCTCATGAACTCGATT
TTACTAATAGCGTTGAGATTACTAAGGGGACATTCATTCTTGGATTTTGG
CGTGGAATTCAAGTCGCTGTGAAAAAGCTTGGGGAAGAAGTGATTTCTGA
TGATGATAGAGTGAGGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGA
TACGACATCCAAATGTTGTCCCATTTCTGGGTGCTGTAACTCAAA
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