FC925218

Overview
NameFC925218
Unique NameFC925218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3530 contig Ccv1_Contig3530:389..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925218 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.196e-55
Identity = 120/230 (52.17%), Postives = 154/230 (66.96%), Query Frame = 2
Query:   62 MASNGANQPLL-SGFVDSTSQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETHKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCV 727
            M+S+ A  PLL +  +D+ +Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE+ T+K+RYKC             GTIFLV+VEKM  + AFYCV
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNKLRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAFYCV 230          
BLAST of FC925218 vs. ExPASy Swiss-Prot
Match: KCO5_ARATH (Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic OS=Arabidopsis thaliana GN=KCO5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 62/216 (28.70%), Postives = 103/216 (47.69%), Query Frame = 2
Query:  107 DSTSQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKAL--------HRYQKVGPTDILKEIE--THKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFY 721
            DS S   N+   + R L R R+AP   V   D+  K       S   K     ++ +  L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  FV  G G + + LS   +Y++D QE +++  +        H + +    D + + E    ++R K              G + L  VE++ FVD+ Y
Sbjct:   68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIRMKVCLALCVVVLCIGVGALVLHFVEELGFVDSVY 279          
BLAST of FC925218 vs. ExPASy Swiss-Prot
Match: KCO6_ARATH (Probable calcium-activated outward-rectifying potassium channel 6 OS=Arabidopsis thaliana GN=KCO6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 58/195 (29.74%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  155 LRRCRSAPQTDVAA---LDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQE-ILLVKALHRYQKVGPTDILKEIE--THKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFY 721
            L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++         +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS    Y++D QE  +L  A  R +       + +++    ++R K              G   +  +E++ ++D+FY
Sbjct:  118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAVGVGIMHFIEEIGWLDSFY 305          
BLAST of FC925218 vs. ExPASy Swiss-Prot
Match: KCO2_ARATH (Probable calcium-activated outward-rectifying potassium channel 2 OS=Arabidopsis thaliana GN=KCO2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.263e-16
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 2
Query:  269 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKA-------LHRYQKVGPTDILKEIETHKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFY 721
            + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  FV  G G + + LS    Y++D QE  +++        L+   KV    I  +    ++R K              G + +  VEK+ ++D+FY
Sbjct:  148 QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQENYMLETARNESLNLNDRDKVRSYIIDVKKGRMRIRLKVGLALGVVVLCLGFGVLIMHFVEKIGWLDSFY 305          
BLAST of FC925218 vs. ExPASy Swiss-Prot
Match: KCO4_ARATH (Putative outward-rectifying potassium channel 4 OS=Arabidopsis thaliana GN=KCO4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 40/149 (26.85%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  275 LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETHKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFY 721
            ++ L  YL  G  ++     Q  G +TN  +D+ YF IVT +TVGYGD+VP++  +K+L+   V TG+  +   L++   +++  QE  ++  +++ +     D + E    ++++K              G +FL V E++ ++D+ Y
Sbjct:   39 MILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNRAIRDHIAEDGKIRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVY 187          
The following BLAST results are available for this feature:
BLAST of FC925218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KCO1_ARATH1.196e-5552.17Calcium-activated outward-rectifying potassium cha... [more]
KCO5_ARATH9.896e-1828.70Probable calcium-activated outward-rectifying pota... [more]
KCO6_ARATH1.429e-1629.74Probable calcium-activated outward-rectifying pota... [more]
KCO2_ARATH9.263e-1631.01Probable calcium-activated outward-rectifying pota... [more]
KCO4_ARATH6.638e-1426.85Putative outward-rectifying potassium channel 4 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YA16FM1 TF Citrus clementina cDNA clone KN0AAP11YA16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925218 ID=FC925218; Name=FC925218; organism=Citrus clementina; type=EST; length=728bp
CTTGATCTGGGGGTGGTCTTGTGTCAGCTTGATAGTCTGAGTCCGCTTTT
GCTATCCTCTAATGGCCTCCAATGGTGCAAATCAGCCCCTGCTCTCAGGA
TTTGTTGATTCCACGTCCCAAACAAATAATAAAGATGCTCCCAAGAGAAG
AAGGCTTCGTCGGTGTAGAAGTGCTCCCCAGACTGATGTTGCTGCTCTAG
ACATAAATGAAAAAGACTCAACTCACCTTTCTGAGTCCCTTTTTGGCAAA
CCCCGCCCAAATTTTAAGAGGGTACTTGTCTACCTGGCTGCCTACCTTGG
TGGGGGGTCATTATCCTTCTATGCTGTCAACAGTCAAATCGAAGGACTAA
AAACCAATGAAATTCTAGATTCTATTTATTTCTGCATCGTGACAATGACC
ACTGTAGGGTATGGAGACCTTGTGCCTAATAGTGTCGTTTCGAAACTACT
TTCCTGTGCTTTTGTTTTCACAGGGATGGGTCTAGTTGGTCTGTTTCTGA
GCAAAGCAGCCGACTATCTGGTCGACAAGCAGGAAATATTGCTGGTTAAA
GCCCTACACAGGTATCAAAAAGTTGGCCCGACTGATATTCTAAAGGAGAT
TGAAACCCACAAAGTGAGATACAAATGCATCATCATGTTGGTCCTTGAGT
TGGTTCTCATTCTCGTTGGGACCATCTTCCTGGTTGTGGTTGAGAAAATG
AGCTTTGTTGATGCGTTCTATTGTGTTT
back to top