FC925220

Overview
NameFC925220
Unique NameFC925220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig638 contig Ccv1_Contig638:588..1379. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925220 vs. ExPASy Swiss-Prot
Match: ICR2_ARATH (Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.134e-40
Identity = 97/262 (37.02%), Postives = 163/262 (62.21%), Query Frame = 3
Query:    3 EARAVELQKVSQETDRSCQSELQAIQNQHSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNRSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGRLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELGADLQKAKSD 788
            ++R  EL+K+SQE D++ QSEL+A+Q QH++DSAAL+S +NE+Q+LKAQ         ++++N E+  +EL        ET+SL+E ++ +L ++KE E QA  +   T  QLE A L++E LR++GMK  EA +S+ +ELE+S++ +  LE LV +LE +          N +GD    +++KE  +                 + +L+SA+E+ E + +E  IQST++I++A+EQ++++K     RE ELG +L+K K++
Sbjct:  126 DSRIDELRKLSQERDKAWQSELEAMQRQHAMDSAALSSTMNEVQKLKAQL--------SESENVENLRMELN-------ETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARG-----NANGDSSSVEELKEEINV------------ARQEISQLKSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAE 355          
BLAST of FC925220 vs. ExPASy Swiss-Prot
Match: ICR3_ARATH (Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.062e-31
Identity = 88/248 (35.48%), Postives = 144/248 (58.06%), Query Frame = 3
Query:   15 VELQKVSQETDRSCQSELQAIQNQ-------HSIDSAALASALNELQQLKAQFEMVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE---ADTSNANRNLSQNRSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGRLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIK 728
            VE   + +ETD++     Q++  +        + + A LA+  +E++QLK Q EMVA SEA   K AE  + E+Q L+GNL++T+  +EN +NQL++ + SE + +ALA ETL QLE AK +VE L+++G KA+E+Y  +A ELE+S++R+  LE LV+KL+   AD  N    L      DY+  ++ + N+                  V RLR+ALE ++ K  EG ++++ +++   E   ++K
Sbjct:  129 VETSALEEETDKTGSLVFQSVSQECDWEFSATAGERAGLAAVAHEIRQLKLQIEMVASSEAGHVKQAELYNSEVQLLRGNLMDTLFHVENFRNQLKDCEISEAETEALATETLRQLENAKKAVEELKSDGTKAVESYKKMAVELEQSKSRMVWLEALVNKLQNNPADLENHEILLK-----DYESLRRGESNE-------MDEEVSSLRCEVERLRAALEASDKKDQEGNVEASSRLRIQAELQSELK 364          
BLAST of FC925220 vs. ExPASy Swiss-Prot
Match: ICR5_ARATH (Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 63/193 (32.64%), Postives = 110/193 (56.99%), Query Frame = 3
Query:    3 EARAVELQKVSQETDRSCQSELQAIQNQHSIDSAALASALNELQQLKAQ-FEMVAESEAA--QTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD-TSNANRNLSQNRSGDYDLGQKIKENQDT 569
            ++R  EL+K+SQE D++ QSEL+A+Q QH +DS AL+SA+NE+Q+LK++ FE  +E E +  + ++ E    +L+  + N  ++ S ME     + E KE    A  L+R+ + QL++A  + E    E  + I++   I S  E++      ++   S+ EA+ T   NR   +      +L +K+KE++ T
Sbjct:  123 DSRIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLKSKLFESESELEQSKYEVRSLEKLVRQLEEERVNSRDSSSSME-----VEELKE----AMNLSRQEITQLKSAVEAAETRYQE--EYIQSTLQIRSAYEQTEA----VKSRYSQREAELTEELNRTKDEIEGLRKELMEKVKEDEST 300          

HSP 2 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 69/250 (27.60%), Postives = 118/250 (47.20%), Query Frame = 3
Query:   48 RSCQSELQAIQNQHSIDSAALASALNELQQ-LKAQFEMVAESEAAQTKNAESAH-LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNRSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGRLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELGADLQKAKSDI 791
            RS +  L  IQ + +     L S +++LQ+ LK   E +  SEA + +  E A   + Q +  N  E   + E  K      K  +++ +A+ R+  +       ++  ++    K  E+     SELE+S+  +  LE LV +LE +  N         S D     +++E ++ M               + +L+SA+E AET+  E  IQST++I+SA+EQ E +K +   RE EL  +L + K +I
Sbjct:   56 RSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLKSKLFES----ESELEQSKYEVRSLEKLVRQLEEERVN---------SRDSSSSMEVEELKEAMNLSRQE---------ITQLKSAVEAAETRYQEEYIQSTLQIRSAYEQTEAVKSRYSQREAELTEELNRTKDEI 283          
The following BLAST results are available for this feature:
BLAST of FC925220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ICR2_ARATH2.134e-4037.02Interactor of constitutive active ROPs 2, chloropl... [more]
ICR3_ARATH1.062e-3135.48Interactor of constitutive active ROPs 3 OS=Arabid... [more]
ICR5_ARATH5.852e-1432.64Interactor of constitutive active ROPs 5 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YA17FM1 TF Citrus clementina cDNA clone KN0AAP11YA17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925220 ID=FC925220; Name=FC925220; organism=Citrus clementina; type=EST; length=792bp
AGGAAGCTCGCGCTGTTGAGCTTCAAAAGGTCTCCCAAGAAACAGATCGA
TCATGCCAATCTGAGCTTCAGGCTATCCAGAATCAGCATTCAATTGACTC
AGCAGCCTTGGCCTCTGCCTTGAATGAGCTCCAGCAACTTAAGGCTCAGT
TTGAAATGGTAGCTGAATCTGAGGCTGCACAGACCAAGAATGCAGAATCA
GCACATTTGGAGCTCCAAAGCTTGAAAGGAAACCTGATAGAAACTATTTC
TCTCATGGAAAACATGAAAAATCAGCTAAGAGAAAGCAAAGAATCGGAAA
CTCAGGCCCAAGCATTGGCCAGGGAAACTCTGCTTCAACTTGAAACTGCA
AAACTATCTGTAGAGGCACTCAGAGCAGAAGGCATGAAAGCCATTGAAGC
TTACAGCTCCATTGCTTCAGAGTTAGAACGGTCGAGGACGCGCATAAACT
TGTTAGAAGGGCTTGTTAGTAAACTTGAAGCTGACACCAGTAATGCCAAT
AGAAATCTTTCACAAAATCGTTCTGGTGATTATGACCTTGGGCAAAAAAT
TAAAGAAAATCAAGACACCATGGAGTCAAAACATCTTGAAGAGGAGCTTT
CTTCTTTGAAGTCAGAAGTAGGACGGCTGAGATCTGCTTTAGAAATTGCT
GAGACTAAACTGAATGAAGGACAAATCCAGAGCACAGTGAAGATAAAAAG
TGCTTTTGAACAGTTGGAGCAGATAAAGCATCAGTCAGGCCTAAGGGAGG
TTGAACTGGGAGCAGACCTACAGAAGGCCAAATCTGACATTG
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