FC925226

Overview
NameFC925226
Unique NameFC925226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925226 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = -2
Query:  376 FETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLR 708
            F T   TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS   R AN +GFMK +P+  CA+ LR
Sbjct:   42 FVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of FC925226 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  358 QAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLRLYQEED 717
            +AGF T    YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   47 RAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of FC925226 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = -2
Query:  358 QAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 717
            +AGFET     + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:   18 RAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of FC925226 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  379 FETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVL 708
            FET     + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI    R+AN + FMKAE + GC E L
Sbjct:   42 FETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of FC925226 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = -2
Query:  370 QAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFE-TRYANSMGFMKAEPMSGCAEVLRLY 717
            +AGFET     + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:   18 RAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of FC925226 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = -2
Query:  355 FETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 708
            F T   T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG + + R AN++GFM+ EP+  C EVL+     DV
Sbjct:   45 FMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of FC925226 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = -2
Query:  382 QAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEV 717
            +AGF T    +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:   23 RAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of FC925226 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = -2
Query:  382 QAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEV 717
            +A F T    +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +      +   + +L + NG    TR  N +GF+K E +  C +V
Sbjct:   23 RARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNG---TTRTINPLGFLKKEVLPKCPQV 134          
The following BLAST results are available for this feature:
BLAST of FC925226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
OLEE1_BETVE2.717e-2041.23Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
PSC13_MAIZE3.549e-2040.83Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
PHLB_PHLPR8.741e-1938.84Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LAT52_SOLLC7.400e-1838.18Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
LOLB_LOLPR1.262e-1738.46Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL6.926e-1636.36Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU3.800e-1433.04Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU3.557e-1232.17Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YF21FM1 TF Citrus clementina cDNA clone KN0AAP8YF21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925226 ID=FC925226; Name=FC925226; organism=Citrus clementina; type=EST; length=718bp
TTTTTTTTTTTTCTTTTTTTTCAATTCCAGAGTTTTCAGCTAATGTTTTA
GAACTCATAAAATTACAAGAGGAAAAGTAGCGGACTAGCTGAAGTCCATA
GCTTCAAAGGCTGGAACAGATTTATTGCAAAAATAAATCAGGCATTACTA
GCGATAAAACACATCTCAAAGCTAGAAGCACCAGCATATAAATAAATTAA
TAGCGTACGCGTCCTTTAACAACAAATTAAGAATTCTCTAAACATAGAAA
CAACACAGCCATCCGGGCACTACTAATAGAAGAGACAGTATAAGGCAACA
CAAAGCTTAAACAAATGGAAAGCGATAGAAAAAACCATGCCACACCATTC
TCTACACATCCTCCTCCTGATATAGCCTGAGAACCTCAGCACAGCCAGAC
ATGGGCTCTGCCTTCATGAAGCCCATTGAATTGGCATATCGGGTTTCAAA
AGAAATGCCGTTGTAACTGGTCAAGATCACACGGGAACGCTCACGCCCTG
GGGCAACTGTTTTGCAGTCATTCTGGGGGCTACTAATGAGGACAGCATCG
CAAAGTTGATCCTGATGGTCTTCTGAAACGAGGATCTTATATGTTCCAGT
TGAGTCTGTTTTCCCTTCCCTGCTATATACTACTTGCATTGACTTCCTGT
CTTTGCATTCAACCTTAACCTTGGCACCGGCGATGTAGGTGGGAGCGGGG
GTCTCAAAGCCGGCTTGG
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