FC925228

Overview
NameFC925228
Unique NameFC925228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14612 contig Ccv1_Contig14612:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SRPK3_HUMAN (Serine/threonine-protein kinase SRPK3 OS=Homo sapiens GN=SRPK3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.401e-29
Identity = 75/234 (32.05%), Postives = 108/234 (46.15%), Query Frame = 1
Query:    1 YLHRELSIIHTDLKPENVLLL-------SKIDPSKDARKSGVP----LILPTKTDKVVTESSASKDNKSLYGDLTKNQXXXXXXXXXXXXQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERRIDSVVNNESSRGNEVKNTSQGVKGHRRPSRGTRKNLLA-------AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 648
            YLH +  IIHTD+KPEN+LL             + + +++G P     I+ T   +V+T   +    K +     + Q            Q     EA   ++A+      D  S  T  +G S     + S  +     G+  +  + G+     P   +  NLL        A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+G++Y   AD+WS AC+ FELATG
Sbjct:  201 YLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQAGAPPPSRSIVSTAPQEVLTGKLSKNKRKKMRRK--RKQQKRLLEERLRDLQRLEAMEA--ATQAEDSGLRLDGGSGSTSSSGFSGS---LFSPASCSILSGSSNQRETGGLLSPSTPFGAS--NLLVNPLEPQNADKIKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATG 425          

HSP 2 Score: 48.521 bits (114), Expect = 5.401e-29
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 2
Query:  644 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 748
            +DH+A ++ELLG +P   AL GRYSR+FFNR G+L
Sbjct:  441 EDHIAHIVELLGDIPPAFALSGRYSREFFNRRGEL 475          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SRPK2_HUMAN (Serine/threonine-protein kinase SRPK2 OS=Homo sapiens GN=SRPK2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.052e-26
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  478 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 648
            ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATG
Sbjct:  524 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATG 580          

HSP 2 Score: 50.8322 bits (120), Expect = 1.052e-26
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 2
Query:  644 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 748
            +DH+A ++ELLG +PR  AL G+YSR+FFNR G+L
Sbjct:  596 EDHIAHIIELLGSIPRHFALSGKYSREFFNRRGEL 630          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SRPK2_MOUSE (Serine/threonine-protein kinase SRPK2 OS=Mus musculus GN=Srpk2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.052e-26
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  478 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 648
            ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATG
Sbjct:  517 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATG 573          

HSP 2 Score: 50.8322 bits (120), Expect = 1.052e-26
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 2
Query:  644 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 748
            +DH+A ++ELLG +PR  AL G+YSR+FFNR G+L
Sbjct:  589 EDHIAHIIELLGSIPRHFALSGKYSREFFNRRGEL 623          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SRPK1_PONAB (Serine/threonine-protein kinase SRPK1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.321e-26
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  469 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 648
            A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct:  488 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 547          

HSP 2 Score: 50.0618 bits (118), Expect = 2.321e-26
Identity = 19/35 (54.29%), Postives = 30/35 (85.71%), Query Frame = 2
Query:  644 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 748
            +DH+AL++ELLG +PRK+ + G+YS++FF + GDL
Sbjct:  563 EDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDL 597          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SRPK1_HUMAN (Serine/threonine-protein kinase SRPK1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.321e-26
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  469 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 648
            A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct:  488 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 547          

HSP 2 Score: 50.0618 bits (118), Expect = 2.321e-26
Identity = 19/35 (54.29%), Postives = 30/35 (85.71%), Query Frame = 2
Query:  644 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 748
            +DH+AL++ELLG +PRK+ + G+YS++FF + GDL
Sbjct:  563 EDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDL 597          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SRPK3_MOUSE (Serine/threonine-protein kinase SRPK3 OS=Mus musculus GN=Srpk3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.916e-25
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  478 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 648
            ++ K+ D GNACW HK FT DIQTRQYR  EVL+G++Y   AD+WS AC+ FELATG
Sbjct:  401 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATG 457          

HSP 2 Score: 48.521 bits (114), Expect = 1.916e-25
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 2
Query:  644 QDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 748
            +DH+A ++ELLG +P   AL GRYSR+FFNR G+L
Sbjct:  473 EDHIAHIVELLGDIPPAFALSGRYSREFFNRRGEL 507          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: DSK1_SCHPO (Protein kinase dsk1 OS=Schizosaccharomyces pombe GN=dsk1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.714e-24
Identity = 73/217 (33.64%), Postives = 98/217 (45.16%), Query Frame = 1
Query:    1 YLHRELSIIHTDLKPENVLLLSKIDPSKDARKSGVPLILPTKTDKVVTESSASKDNKSLYGDLTKNQXXXXXXXXXXXXQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERRIDSVVNNESSRGNEVKNTSQGVKGHRRPSRGTRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 648
            YLHRE  IIHTDLKPENVL+    D  +            T +    T SS +++N          +            +  A     +   A    PSSP   ++   P+     E  +  +   +S + N   N+      +     G   +      +  K+ D GNACWT K FTND+QTRQYR PEV+LG ++  SAD WSFACI FEL TG
Sbjct:  203 YLHRECGIIHTDLKPENVLICIDQDALQHIEAPAT-----TSSPTSNTSSSKTRNNTGYTAKAPIIKRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPS----LEGAVSEISLRDSQKHNSHPNSPFSSGDNSLILDGVNGSQEPVPKITVKIADLGNACWTRKHFTNDVQTRQYRSPEVILGCRWGASADCWSFACIIFELLTG 410          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SKY1_DICDI (Probable serine/threonine-protein kinase sky1 OS=Dictyostelium discoideum GN=sky1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.798e-22
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  481 QCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 648
            + +LVD GNACWT K FT+DIQTRQYR PE ++ +K+ T  D+WS AC+ FELATG
Sbjct:  486 RAQLVDLGNACWTDKHFTDDIQTRQYRAPEAIVKAKWGTPVDIWSAACMAFELATG 541          

HSP 2 Score: 41.5874 bits (96), Expect = 1.798e-22
Identity = 21/34 (61.76%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  647 DHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 748
            DHLALM+ELLG  PR I  GG  SR +F   GDL
Sbjct:  558 DHLALMIELLGKPPRFIFAGGDESRVYFTHKGDL 591          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SRPK1_MOUSE (Serine/threonine-protein kinase SRPK1 OS=Mus musculus GN=Srpk1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.363e-17
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  469 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGSLGTDDGASRDDATQD 696
            A  +Q K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG     +  S +D T+D
Sbjct:  481 AEKLQVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDY-LFEPHSGEDYTRD 555          
BLAST of FC925228 vs. ExPASy Swiss-Prot
Match: SPK1_CAEEL (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis elegans GN=spk-1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.325e-17
Identity = 82/281 (29.18%), Postives = 116/281 (41.28%), Query Frame = 1
Query:    1 YLHRELSIIHTDLKPENVLLLSKIDPSKD-------ARKSGVPL---ILPTKTDKVV--TESSASKDNKSLYGDLTKNQXXXXXXXXXXXXQGCAGT--EAFDESEADSKPSSPDNFSVDTIPNGVSVEERRIDSVVNNESSRGN-EVKNT---------------------------------SQGVKGHRRPSRGTRKNLLAAV-DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGSL----GTDDGASRDD 684
            Y+H +  IIHTD+KPENVL+    +  K        ARK  + +    + T  D +V   + + +K+ K       K Q             G  G   +A    EA +     +NF      N   VE+  ++  VN   +R   E+++                                  SQ   G   P+     N+     D+  K+ D GNACW +  +T+DIQTRQYR  EVL+GS Y   AD+WS AC+ FELATG         D  SRD+
Sbjct:  544 YMHEKCGIIHTDIKPENVLITMSREEIKIMAQHAVVARKMNMKMSGSAVSTAPDHLVKMAQENMTKNKKKKMKKKAKKQREKLEAELA----GLEGLKMDANGLQEAYNNAPELENF------NASQVEDVTMEDTVNENGNRNKVEIRSPDRFDRTTLTPFSDPESKFGDLASPSAEYLSSPMSQLPPGGILPAPPVGPNIGDPYCDIDVKIADLGNACWVNHHYTDDIQTRQYRALEVLIGSGYGPPADIWSTACMAFELATGDYLFEPHQGDNYSRDE 814          
The following BLAST results are available for this feature:
BLAST of FC925228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SRPK3_HUMAN5.401e-2932.05Serine/threonine-protein kinase SRPK3 OS=Homo sapi... [more]
SRPK2_HUMAN1.052e-2666.67Serine/threonine-protein kinase SRPK2 OS=Homo sapi... [more]
SRPK2_MOUSE1.052e-2666.67Serine/threonine-protein kinase SRPK2 OS=Mus muscu... [more]
SRPK1_PONAB2.321e-2665.00Serine/threonine-protein kinase SRPK1 OS=Pongo abe... [more]
SRPK1_HUMAN2.321e-2665.00Serine/threonine-protein kinase SRPK1 OS=Homo sapi... [more]
SRPK3_MOUSE1.916e-2563.16Serine/threonine-protein kinase SRPK3 OS=Mus muscu... [more]
DSK1_SCHPO5.714e-2433.64Protein kinase dsk1 OS=Schizosaccharomyces pombe G... [more]
SKY1_DICDI1.798e-2262.50Probable serine/threonine-protein kinase sky1 OS=D... [more]
SRPK1_MOUSE1.363e-1757.89Serine/threonine-protein kinase SRPK1 OS=Mus muscu... [more]
SPK1_CAEEL2.325e-1729.18Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YA20FM1 TF Citrus clementina cDNA clone KN0AAP11YA20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925228 ID=FC925228; Name=FC925228; organism=Citrus clementina; type=EST; length=749bp
TATTTGCATCGCGAGCTTTCAATTATTCACACTGATTTGAAGCCAGAGAA
TGTGTTGCTCTTGTCAAAAATTGATCCATCTAAAGATGCCCGCAAATCAG
GTGTTCCCCTCATCCTTCCTACTAAAACGGATAAAGTTGTGACAGAATCT
AGTGCTTCAAAAGACAATAAGAGTCTTTATGGGGATCTGACCAAGAACCA
AAAAAAGAAGGTAAAAAAAAAGGCCAAGAAGGCTGCTCAGGGTTGTGCAG
GGACTGAAGCATTTGATGAAAGTGAAGCAGACTCCAAACCATCTAGTCCT
GATAATTTTAGTGTCGATACAATACCAAATGGGGTTTCTGTTGAAGAACG
GCGGATTGATTCTGTGGTTAACAATGAATCATCCAGGGGTAATGAAGTAA
AAAATACTAGCCAAGGAGTTAAGGGTCATAGAAGGCCAAGCCGTGGCACG
AGGAAAAATCTTTTGGCTGCGGTTGATGTGCAGTGTAAATTGGTTGATTT
TGGAAATGCTTGTTGGACACACAAACAATTTACAAATGACATTCAGACCA
GGCAGTATAGATGTCCCGAGGTTCTTCTTGGATCTAAATACTCCACTTCA
GCAGATCTATGGTCCTTTGCTTGCATATGCTTTGAGCTGGCGACAGGATC
ACTTGGCACTGATGATGGAGCTTCTCGGGATGATGCCACGCAAGATTGCA
TTGGGTGGTCGCTATTCCCGTGATTTCTTCAACAGACATGGGGATTTGA
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