FC925229

Overview
NameFC925229
Unique NameFC925229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6655 contig Ccv1_Contig6655:373..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925229 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 2 
Query:  545 MACVKLGSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAM 703
            MAC+KLGSK+DAFQRQGQAWFCT+GLPSDIVVEVGEMSFHLHKFPLLSRSG M
Sbjct:    1 MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVM 53
[Close]
BLAST of FC925229 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 28/47 (59.57%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:  563 GSKTDAFQRQGQAWFCTSGLPSDIVVEVGEMSFHLHKFPLLSRSGAM 703
            G KTD F+ +GQ+WF  + +PSD++V++G+M+FHLHK+PLLSRSG M
Sbjct:   32 GVKTDGFELRGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKM 78
The following BLAST results are available for this feature:
BLAST of FC925229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1044_ARATH9.699e-2392.45BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT3_ARATH1.006e-1159.57Root phototropism protein 3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YF22FM1 TF Citrus clementina cDNA clone KN0AAP8YF22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925229 ID=FC925229; Name=FC925229; organism=Citrus clementina; type=EST; length=705bp
TTATGGAATCTTCTCCGTGAGGCTTGAGGCCGAGATGAAAGGGTTTTGAT
TTTATGAAAGGAAAAGTGGAGGGGTTGACCAAATTAGGAAGTTTGGTGGT
TTTAGGCTGAGAATTTAGTGCTTCTTCTGAAGTTGTTTTATGGTTAATTT
TACATGGGATCAGAACTGGGTTTCTGAAAAGATTAACCTATTGATTGACT
TTGGGGAAGTTTTTTTCTGAGAGTAGAGCGGCCTTGTGCTGTTTTCTGGG
CTTGTTTTTTACATAAATGTCATAGAAGAAGCTACATTTTGGTGCTCTTG
CTACAATTTAGAAGATGAAGTCTGAGGAATTTTGGGTTGTTTTCTCAACG
TTTTTGTGGGTAAATTTGGTTTGAGAGTGGCGTGCACTGTGCAGGAGCAA
AACTCAACTCGGATTGTGTGTTTGTTTGTGGAAGTGCTTTGGTTTGGGGT
ATTTTAGGTTGTATTGTTCTTAAGTTAGGTGTTTAGCTTAGCTCTTTACT
TGAAGCTCTATTTTTTATTTGATCCCAGCCTGCATCGTCAGAAAATGGCT
TGCGTGAAACTGGGATCCAAAACTGATGCGTTTCAACGGCAAGGACAGGC
ATGGTTCTGCACATCTGGTCTTCCTAGTGATATAGTTGTTGAAGTTGGAG
AGATGTCCTTCCACCTCCACAAGTTCCCATTACTCTCTAGAAGTGGGGCT
ATGGA
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