FC925233

Overview
NameFC925233
Unique NameFC925233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925233_ssr157 microsatellite FC925233_ssr157:157..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig696 contig Ccv1_Contig696:96..508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925233 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.974e-29
Identity = 73/124 (58.87%), Postives = 86/124 (69.35%), Query Frame = 3
Query:   66 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLL 413
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLL 143          
BLAST of FC925233 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.553e-15
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  213 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLL 413
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAML 112          
BLAST of FC925233 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.553e-15
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 3
Query:   60 IRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLL 413
            I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L
Sbjct:   21 ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVL 144          
BLAST of FC925233 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.460e-14
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  213 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLL 413
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L
Sbjct:   50 PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVL 117          
BLAST of FC925233 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  186 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTS 404
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATA 173          
The following BLAST results are available for this feature:
BLAST of FC925233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA7.974e-2958.87Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI6_HORVU6.553e-1557.35Low molecular mass early light-inducible protein H... [more]
DS22_CRAPL6.553e-1541.94Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU1.460e-1457.35Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU3.044e-1250.67High molecular mass early light-inducible protein ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YE12FM1 TF Citrus clementina cDNA clone KN0AAP3YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925233 ID=FC925233; Name=FC925233; organism=Citrus clementina; type=EST; length=413bp
CCGCATCACTTCTTTCTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGT
GTGACTGGTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTA
CTTGCCTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAG
AGGATGAGCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATACCGAAA
GCTGAGCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGA
GGTGTTCGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTG
CGATGATTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAG
GATGTGTTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGAC
CAGTGTTTTGCTC
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