FC925238

Overview
NameFC925238
Unique NameFC925238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1969 contig Ccv1_Contig1969:31..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.969e-54
Identity = 101/171 (59.06%), Postives = 134/171 (78.36%), Query Frame = 2
Query:   56 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAQVTSHALSLINKFAGK 568
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+S+S  E+ ++  AKG DF + MSNVETWVSAALTDE TC DGF GK ++GK+K SVRAQVV VA+VTS+AL+L+N FA K
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAK 190          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 49/158 (31.01%), Postives = 89/158 (56.33%), Query Frame = 2
Query:   83 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAQVTSHALSLI 550
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF        V+ ++    V+V ++ S+AL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLS--QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 49/158 (31.01%), Postives = 89/158 (56.33%), Query Frame = 2
Query:   83 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAQVTSHALSLI 550
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF        V+ ++    V+V ++ S+AL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLS--QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 47/168 (27.98%), Postives = 89/168 (52.98%), Query Frame = 2
Query:   50 VTAAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAQVTSHALSLI 550
            +T         ++S C ST YP LC  +++A       S +++   +L+++    +     V KL  K + L  RE  A+ DCL+ + +T+D L  +V++L+   + K      H  +++T +S+A+T++ TC DGF     + KV+ ++    V+V  + S+AL++I
Sbjct:   51 ITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKS--LRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMI 216          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.726e-14
Identity = 45/157 (28.66%), Postives = 91/157 (57.96%), Query Frame = 2
Query:   83 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAQVTSHALSLI 550
            +RSSC ST YP LC+ ++         S + +   +++++++  +     V KL +K + L  RE  A+ DCL+ + +T+D L ++V++L H+   K +    H  +++T +S+A+T++ TC DGF     + +V+ ++    ++V  + S+AL++I
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDL-HLYPTK-KTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMI 213          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 53/165 (32.12%), Postives = 82/165 (49.70%), Query Frame = 2
Query:   83 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHM-GRAKGQDFLWHMSNVETWVSAALTDENTCTDGFG---GKALEGKVKSSVRAQVVNVAQVTSHALSLINKFAG 565
            +++ C +T YP+ C  S+S+   S    P  L   +L V++    S   F +KLR       R   AI  C    GD +DRL+ S+  L  + GR         +SNVETW+SAALTD++TC D  G     A  G ++  +   + N  +  S++L+++ K  G
Sbjct:   77 LKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSS---FPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSA---SVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQ-EIETAMRNSTEFASNSLAIVTKILG 234          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 45/159 (28.30%), Postives = 88/159 (55.35%), Query Frame = 2
Query:   83 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRN-LKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAQVTSHALSLI 550
            ++S+C +T +P LC  ++   +   ++   Q  V  LS++++     +++  V +L K R  L  RE  A+ DCL+ M +T+D L  +V++L      K      H+ +++T +S+A+T++ TC DGF     + KV+  +     +V ++ S+AL++I
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKS--LKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMI 222          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 49/158 (31.01%), Postives = 84/158 (53.16%), Query Frame = 2
Query:   83 IRSSCKSTTYPALCVQSLSAYAPSIQ-QSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAQVTSHALSLIN 553
            I  +C+ T +P LCV SL  +  S+   S + L    ++++L     A      L  F ++  R   A   C++ + D+VD LS+++  +     AK QD       V TW+SAALT+ +TCT+GF G   +G VK  + A + N++++ S+ L++ +
Sbjct:   87 ISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASL-SFVDMPPRARSAYDSCVELLDDSVDALSRALSSVVSSS-AKPQD-------VTTWLSAALTNHDTCTEGFDG-VDDGGVKDHMTAALQNLSELVSNCLAIFS 234          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 48/178 (26.97%), Postives = 91/178 (51.12%), Query Frame = 2
Query:   74 TRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGG-KALEGKVKSSVRAQVVNVAQVTSHALSLINKFAGKT-----*PVVNH 589
            T+ I  +C  + YP LC+ +L  +  S+     +L   + + +L +   A  + +    +  +  R   A   CL+ + D+VD L++++  +  +   +        S+V TW+S+A+T+ +TCTDGF   +   G+VK  V   V +++++ S+ L++   FAGK       PVVN+
Sbjct:   72 TQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKAL-YTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDESH------SDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAI---FAGKVKDLSGVPVVNN 239          
BLAST of FC925238 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11
Identity = 43/165 (26.06%), Postives = 78/165 (47.27%), Query Frame = 2
Query:   83 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYGAIADCLDEMGDTVDRLSKSVQELNHMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFG------GKALEGKVKSSVRAQVVNVAQVTSHALSLINKF 559
            +R+ C  T YPA CV S+S    S    P  L   +L V ++   S      KL +  +   R   +++ C D   D +D ++ ++  +  +G  K       +  ++TW+SAA+TD +TC D          +     +   +++ +VN  + TS++L++I KF
Sbjct:  271 LRNVCSVTRYPASCVSSISKLPSSNTTDPEALFRLSLQVVINELNSIAGLPKKLAEETD-DERLKSSLSVCGDVFNDAIDIVNDTISTMEEVGDGKKILKSSTIDEIQTWLSAAVTDHDTCLDALDELSQNKTEYANSPISLKLKSAMVNSRKFTSNSLAIIAKF 434          
The following BLAST results are available for this feature:
BLAST of FC925238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
21KD_DAUCA7.969e-5459.0621 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI3.866e-1631.01Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI3.866e-1631.01Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME2_ARATH2.771e-1427.98Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH4.726e-1428.66Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_PHAVU1.375e-1332.12Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PMEU1_SOLLC9.855e-1228.30Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME34_ARATH9.855e-1231.01Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME61_ARATH1.681e-1126.97Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME26_ARATH8.343e-1126.06Putative pectinesterase/pectinesterase inhibitor 2... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YE15FM1 TF Citrus clementina cDNA clone KN0AAP3YE15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925238 ID=FC925238; Name=FC925238; organism=Citrus clementina; type=EST; length=605bp
AACAGGCTGTCTTTTGCTATTGCTCTCTCTCCTCTACATTATAAGCTTGG
TCACAGCTGCCGGGATTGCTGACACAAGATTTATCAGAAGTTCTTGCAAA
TCCACAACTTATCCAGCGCTATGCGTGCAGTCTCTCTCAGCTTATGCCCC
ATCAATTCAACAAAGCCCCCGGCAACTGGCTGTCACAGCCTTGTCCGTGA
GCCTCTCCAGGGCCCAATCCGCAAAGTCATTCGTGACCAAGCTGAGGAAG
TTCAGGAACCTGAAGCACAGAGAGTATGGGGCAATTGCCGACTGCTTAGA
TGAGATGGGTGACACTGTGGACCGGCTCAGCAAGTCGGTTCAGGAGCTGA
ACCACATGGGTCGGGCCAAGGGTCAGGACTTTCTGTGGCACATGAGCAAC
GTTGAGACATGGGTTAGTGCTGCTTTGACTGATGAGAACACTTGTACTGA
TGGGTTCGGTGGCAAGGCCTTGGAGGGTAAGGTTAAGTCCTCTGTTAGGG
CTCAGGTTGTTAATGTTGCTCAGGTCACTAGCCATGCCCTTTCACTGATC
AATAAATTTGCTGGGAAAACCTGACCCGTAGTTAACCATATGGCTGTGTG
AATGT
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