FC925239

Overview
NameFC925239
Unique NameFC925239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11965 contig Ccv1_Contig11965:328..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.402e-67
Identity = 122/164 (74.39%), Postives = 140/164 (85.37%), Query Frame = 1
Query:   46 ESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E+G  + +  S+        S   K+GMVLPFEP+S+TFD+VVYSVDMPQ+MK QG  ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I+ISGYPKKQETFARISGYCEQNDIHSP+VT+YESL YSAWLRLP +V+ +TRKMF+
Sbjct:  801 ENGEVSSQITSTDGGDSISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFV 964          

HSP 2 Score: 26.5646 bits (57), Expect = 1.402e-67
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  518 KPERCLFEEVMELVELKPLRQS 583
            K  +   +EVMELVEL PLR +
Sbjct:  958 KTRKMFVDEVMELVELGPLRSA 979          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.172e-65
Identity = 122/179 (68.16%), Postives = 139/179 (77.65%), Query Frame = 1
Query:    1 QDNTFGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            Q N  G  + +     S N     N+ +S   A+ S P +RGMVLPF P SLTFD + YSVDMPQ+MK  G+ ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESL +SAWLRLP +V+S TRKMFI
Sbjct:  816 QANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFI 994          

HSP 2 Score: 29.261 bits (64), Expect = 2.172e-65
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  527 RCLFEEVMELVELKPLRQS 583
            +   EEVMELVELKPLR +
Sbjct:  991 KMFIEEVMELVELKPLRDA 1009          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.172e-65
Identity = 124/177 (70.06%), Postives = 143/177 (80.79%), Query Frame = 1
Query:    7 NTFGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            N  G  V+L   G + + N   ++++   E   +  +KRGMVLPF P S+TFD + YSVDMPQ+MK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GDI ISGYPKKQETFARI+GYCEQNDIHSP VT+YESL YSAWLRLP EV+SE RKMF+
Sbjct:  798 NRTGENVELLTLG-TDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFV 973          

HSP 2 Score: 23.0978 bits (48), Expect = 2.172e-65
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  539 EEVMELVELKPLR 577
            EEVMELVEL  LR
Sbjct:  974 EEVMELVELTSLR 986          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.087e-64
Identity = 119/179 (66.48%), Postives = 138/179 (77.09%), Query Frame = 1
Query:    1 QDNTFGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            Q N  G  + +     S N     ++ +    A+ S P +RGMVLPF P SLTF+++ YSVDMPQ+MK  G+ ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESL +SAWLRLP +V+S TRKMFI
Sbjct:  820 QANINGNVLDVDTMASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFI 998          

HSP 2 Score: 29.261 bits (64), Expect = 3.087e-64
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  527 RCLFEEVMELVELKPLRQS 583
            +   EEVMELVELKPLR +
Sbjct:  995 KMFIEEVMELVELKPLRDA 1013          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 6.845e-64
Identity = 123/177 (69.49%), Postives = 136/177 (76.84%), Query Frame = 1
Query:    7 NTFGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            N  G  V+L+  G +        S     E      +K+GMVLPF P S+TFD V YSVDMPQ+MK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTGGYI GDIRISGYPK QETFARISGYCEQNDIHSP VT+YESL YSAWLRLP EV+ + RKMF+
Sbjct:  800 NRTGANVELATRGSAAT------SDGGSVEIRKDGNRKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFV 970          

HSP 2 Score: 23.483 bits (49), Expect = 6.845e-64
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  518 KPERCLFEEVMELVELKPLRQS 583
            K  +   +EVM+LVEL  LR S
Sbjct:  964 KQRKMFVDEVMDLVELNSLRGS 985          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 7.928e-64
Identity = 118/165 (71.52%), Postives = 138/165 (83.64%), Query Frame = 1
Query:   55 NDNRERNSSSSLTEAE----ASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            ++N E  SS  +T  +    AS  KK+GMVLPF+P+S+TFDEVVYSVDMP +M+  G  +++LVLL  VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I+ISGYPKKQ+TFARISGYCEQNDIHSP+VT++ESL YSAWLRLP +VN E R MF+
Sbjct:  801 SENNESESSPQITSTQEGDSASENKKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRMMFV 965          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 7.928e-64
Identity = 122/164 (74.39%), Postives = 134/164 (81.71%), Query Frame = 1
Query:   46 ESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            E  +D  E  S+ S    EA   KKRGMVLPFEP+S+TFD VVYSVDMPQ+M  QG  ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPK Q+TFARISGYCEQ DIHSP VT+YESL YSAWLRLP EV+   RK+FI
Sbjct:  789 EPASDETELQSARSEGVVEAGANKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFI 952          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.139e-63
Identity = 118/155 (76.13%), Postives = 136/155 (87.74%), Query Frame = 1
Query:   73 NSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            + +S +  A++S  +K GMVLPF P S++F++V YSVDMP+ MK QG+ ED+L+LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GDIRISGYPKKQETFARISGYCEQNDIHSP VT+YESL +SAWLRLP EV+SE RKMFI
Sbjct:  826 DQNSGINSADSSASRK-GMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARKMFI 979          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.653e-62
Identity = 120/173 (69.36%), Postives = 136/173 (78.61%), Query Frame = 1
Query:   19 GTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            G V LS+ G +         + S    + +   +RGMVLPF P SL+FD V YSVDMPQ+MK QGV +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESL +SAWLRLP +V+S TRKMFI
Sbjct:  816 GDVHLSS-GSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFI 987          

HSP 2 Score: 26.1794 bits (56), Expect = 1.653e-62
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  527 RCLFEEVMELVELKPLRQS 583
            +   EEVMELVELK LR +
Sbjct:  984 KMFIEEVMELVELKSLRDA 1002          
BLAST of FC925239 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.653e-62
Identity = 120/173 (69.36%), Postives = 136/173 (78.61%), Query Frame = 1
Query:   19 GTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTIYESLFYSAWLRLPPEVNSETRKMFI 537
            G V LS+ G +         + S    + +   +RGMVLPF P SL+FD V YSVDMPQ+MK QGV +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESL +SAWLRLP +V+S TRKMFI
Sbjct:  816 GDVHLSS-GSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFI 987          

HSP 2 Score: 26.1794 bits (56), Expect = 1.653e-62
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  527 RCLFEEVMELVELKPLRQS 583
            +   EEVMELVELK LR +
Sbjct:  984 KMFIEEVMELVELKSLRDA 1002          
The following BLAST results are available for this feature:
BLAST of FC925239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
PDR1_TOBAC1.402e-6774.39Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR2_ORYSJ2.172e-6568.16Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR7_ORYSJ2.172e-6570.06Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR1_ORYSJ3.087e-6466.48Probable pleiotropic drug resistance protein 1 OS=... [more]
TUR2_SPIPO6.845e-6469.49Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_NICPL7.928e-6471.52Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB40G_ARATH7.928e-6474.39ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR4_ORYSJ5.139e-6376.13Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR3_ORYSJ1.653e-6269.36Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI1.653e-6269.36Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YE18FM1 TF Citrus clementina cDNA clone KN0AAP3YE18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925239 ID=FC925239; Name=FC925239; organism=Citrus clementina; type=EST; length=585bp
CAAGATAACACATTTGGAGGAACTGTTCAGTTATCAAACTGTGGAGAGAG
TGGAAATGACAATAGGGAAAGAAACTCCTCCTCATCCCTTACAGAAGCAG
AGGCCAGTCATCCAAAGAAAAGAGGAATGGTTCTTCCATTTGAACCTTAT
TCCCTTACCTTTGATGAGGTTGTATACTCCGTTGACATGCCACAGCAAAT
GAAACTTCAAGGAGTTCCTGAAGATAAATTAGTGCTTTTGAATGGTGTGA
GCGGTGCTTTTCGGCCTGGTGTACTAACCGCTTTAATGGGTGTCAGTGGT
GCTGGTAAAACTACTTTGATGGATGTATTGGCTGGCAGGAAAACGGGTGG
ATATATTACTGGGGATATAAGAATATCTGGTTACCCAAAGAAGCAAGAAA
CGTTTGCTCGTATTTCAGGATACTGTGAGCAAAATGACATCCACTCTCCT
TTTGTTACTATATATGAGTCCTTGTTCTATTCGGCCTGGCTACGTTTACC
ACCTGAAGTTAATTCTGAAACCAGAAAGATGTTTATTTGAGGAAGTCATG
GAGCTTGTGGAGCTGAAACCATTGAGACAGTCACT
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