FC925249

Overview
NameFC925249
Unique NameFC925249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3785 contig Ccv1_Contig3785:2..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 485.723 bits (1249), Expect = 1.049e-136
Identity = 237/241 (98.34%), Postives = 240/241 (99.59%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKK 724
            KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAV RWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFD+LLSIK+AWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAR+HIKDMMRQMWKK
Sbjct:  293 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDLLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVARQHIKDMMRQMWKK 533          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.101e-80
Identity = 144/241 (59.75%), Postives = 181/241 (75.10%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKK 724
            K TGL E LSFAR+R V +F W++G+ F+PQF YCRR+ T   ALIT IDD+YDVYGTLDELE+FTD V RWDIN A+  LP YMK+CFL L+N VNE A   +K+Q F ++  +K AW+ L + YLVEAKWY +KY P L+EY+EN  +SI  P I+  +Y   TNPI K+ L+ LE  P+I+ WSS I RL DDLGTS+DE++RGDVPK+IQCYM+ETGASEE ARE+IK ++   WKK
Sbjct:  298 KSTGLVENLSFARDRPVENFFWTVGLIFQPQFGYCRRMFTKVFALITTIDDVYDVYGTLDELELFTDVVERWDIN-AMDQLPDYMKICFLTLHNSVNEMALDTMKEQRFHIIKYLKKAWVDLCRYYLVEAKWYSNKYRPSLQEYIENAWISIGAPTILVHAYFFVTNPITKEALDCLEEYPNIIRWSSIIARLADDLGTSTDELKRGDVPKAIQCYMNETGASEEGAREYIKYLISATWKK 537          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.931e-67
Identity = 126/242 (52.07%), Postives = 174/242 (71.90%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL-ESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKK 724
            KD+ LGEKL F R+RLV  FLW +G+ FEPQF+Y R + T    L+T+IDD++D+YGTL+EL++FT+A+ RWD+   L  LP YMK  F   YNF NE A+ VL++  F  +   K   + L + +L EAKW++S Y P L+EY+ENG +S+ G +I+  +Y + TNP+ K+ LE L + +P+IV  +S I RL DDLGT SDE++RGDVPKSIQCYMH+TGASE+ AREHIK ++ + WK+
Sbjct:  324 KDSKLGEKLPFVRDRLVECFLWQVGVRFEPQFSYFRIMDTKLYVLLTIIDDMHDIYGTLEELQLFTNALQRWDLK-ELDKLPDYMKTAFYFTYNFTNELAFDVLQEHGFVHIEYFKKLMVELCKHHLQEAKWFYSGYKPTLQEYVENGWLSVGGQVILMHAYFAFTNPVTKEALECLKDGHPNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYMHDTGASEDEAREHIKYLISESWKE 564          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.115e-64
Identity = 119/240 (49.58%), Postives = 163/240 (67.92%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL-ESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMW 718
            K+TGLG +L F R+R+V ++ W++G+ +EPQF Y RR++ I  ALITVIDDIYD+YGT +ELE+FT  V  WDIN  L  LP YMK+CFL L+N +N     VLK ++ D++   K +W  L +AYLVEAKWY   Y P +EEY++N  +SI+ P ++   Y + +  I  + LE L +   D+V  S+ + RL +DL TS DE+ RGDV KS+QCYMHETG SEE AR H++ M+   W
Sbjct:  295 KETGLGSQLHFVRDRIVENYFWTVGMIYEPQFGYIRRIVAIVAALITVIDDIYDIYGTPEELELFTAMVQNWDIN-RLDELPEYMKLCFLTLFNEINAMGCDVLKCKNIDVIPYFKKSWADLCKAYLVEAKWYKGGYKPSVEEYMQNAWISISAPTMLIHFYCAFSGQISVQILESLVQQQQDVVRCSATVLRLANDLATSPDELARGDVLKSVQCYMHETGVSEEEARTHVQQMISHTW 533          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.068e-64
Identity = 122/235 (51.91%), Postives = 166/235 (70.64%), Query Frame = 2
Query:   23 KLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL-ESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKK 724
            K+ +AR+RLV +FLW +G+ FEPQF++ RR+     ALIT+IDDIYDVYGTL+ELE+FT AV RWD    +  LP YMK+ F  L+N VNE AY VL++ +F  +  +K++W  L + YL EAKW++S Y P L++Y+EN  +SI G +I   ++ S T  I  + LE L E +       S + RL DDLGT SDE++RGDVPKSIQCYMH+TGASE+ AREHIK ++ ++WK+
Sbjct:  325 KMVYARDRLVEAFLWQVGVRFEPQFSHFRRISARIYALITIIDDIYDVYGTLEELELFTKAVERWDAK-TIHELPDYMKLPFFTLFNTVNEMAYDVLEEHNFVTVEYLKNSWAELCRCYLEEAKWFYSGYKPTLKKYIENASLSIGGQIIFVYAFFSLTKSITNEALESLQEGHHAACRQGSLMLRLADDLGTLSDEMKRGDVPKSIQCYMHDTGASEDEAREHIKFLISEIWKE 558          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.314e-64
Identity = 119/240 (49.58%), Postives = 162/240 (67.50%), Query Frame = 2
Query:    2 KDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL-ESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMW 718
            KDT L  +L F R+R+V ++ W++G+ +EPQF Y RR++TI  AL+T IDDIYD+YGTL+ELE+FT  V  WD+N  L  LP YM++CFL LYN +N     +LK +  D++  +K +W  L + YLVEAKWY   Y P LEEY++N  +SI+ P I+   Y   ++ I  + LE L +    IV  S+ + RL +DLGTS  E+ RGDV KS+QCYMHETGASEE AR+H+  M+  MW
Sbjct:  293 KDTCLTNQLPFVRDRIVENYFWTVGLIYEPQFGYIRRIMTIVNALVTTIDDIYDIYGTLEELELFTSMVENWDVN-RLGELPEYMRLCFLILYNEINGIGCDILKYKKIDVIPYLKKSWADLCRTYLVEAKWYKRGYKPSLEEYMQNAWISISAPTILIHFYCVFSDQISVQNLETLSQHRQHIVRCSATVLRLANDLGTSPTELARGDVLKSVQCYMHETGASEERARDHVHQMISDMW 531          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.546e-63
Identity = 117/238 (49.16%), Postives = 168/238 (70.59%), Query Frame = 2
Query:   14 LGEKLSFARNRLVASFLWSMGIAFEP-QFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKK 724
            L EKL F R+R+V  F W++  AFEP Q++Y R++  + I  IT+IDD+YDVYGT++ELE+ TD + RWD N ++  LP YM++C+LALYNFV+E AY +LK Q F+ +  ++ +W+ L++ YL EA WY++ Y P LEEYL N  +SI+ P II+  Y +  N I +  +E L    +I++ S  I RL DDLGTS  E++RGDVPK+IQCYM++T ASE  A EH+K ++R+ WK+
Sbjct:  298 LAEKLPFVRDRIVECFFWAIA-AFEPHQYSYQRKMAAVIITFITIIDDVYDVYGTIEELELLTDMIRRWD-NKSISQLPYYMQVCYLALYNFVSERAYDILKDQHFNSIPYLQRSWVSLVEGYLKEAYWYYNGYKPSLEEYLNNAKISISAPTIISQLYFTLANSIDETAIESLYQYHNILYLSGTILRLADDLGTSQHELERGDVPKAIQCYMNDTNASEREAVEHVKFLIREAWKE 533          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 112/238 (47.06%), Postives = 166/238 (69.75%), Query Frame = 2
Query:    8 TGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWK 721
            TGL  +L F R+R+V  + W+ G+    +  Y R +LT   AL+T IDD++D+YGTL+EL++FT A+ RWDI  ++K LP YM++C+LAL+NFVNE AY  L+ + F+    ++ AW+ L+++YL+EAKWY+  + P LEEY++N  +SI G  I++  +   T+ I +++ E +    DIV  S  I RL DD+GTS DE++RGDVPKS+QCYM+E  ASEE AREH++ ++ Q WK
Sbjct:  298 TGLVHELPFVRDRIVECYYWTTGVVERREHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIE-SMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFNSTPYLRKAWVDLVESYLIEAKWYYMGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEDAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWK 534          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.379e-61
Identity = 114/239 (47.70%), Postives = 165/239 (69.04%), Query Frame = 2
Query:    5 DTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL-ESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMW 718
            +TGLG++L FAR+R+V ++ W++G   EPQ+ Y R+ +T   AL+T IDDIYD+YGTL+EL++FT A   WDIN  L  LP YM++CFL +YN VN  A  +L+ ++ +++  +K +W  + +AYLVEAKWY S + P LEEY++N  +SI+ P I    Y   ++ +  + LE L +   ++V  SS +FRL +DL TS DE+ RGDV KSIQCYM ETGASE+ AR H++ M+  +W
Sbjct:  291 ETGLGKQLYFARDRIVENYFWTIGQIQEPQYGYVRQTMTKINALLTTIDDIYDIYGTLEELQLFTVAFENWDIN-RLDELPEYMRLCFLVIYNEVNSIACEILRTKNINVIPFLKKSWTDVSKAYLVEAKWYKSGHKPNLEEYMQNARISISSPTIFVHFYCVFSDQLSIQVLETLSQHQQNVVRCSSSVFRLANDLVTSPDELARGDVCKSIQCYMSETGASEDKARSHVRQMINDLW 528          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.354e-59
Identity = 104/237 (43.88%), Postives = 161/237 (67.93%), Query Frame = 2
Query:    8 TGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMW 718
            TGL ++L F R+R+  S+ W++GI +EP+F YCR++LT    LI ++DDIYD+YGTL+ELE+FT+ V +WD+N+ ++ LP YM+MCFL LYN +N+  Y VL+ +  +++  +K  W  L + +L E+KWY + + P  EEY++NG++S + P I+   +   ++ I  + L     N  +V   + I RL +DL TS++E+ RGD PKS+QCYM+ET ASEE AR H++ M+   W
Sbjct:  303 TGLMKQLDFVRDRITESYFWTIGIFYEPEFKYCRKILTKIFMLIVIMDDIYDIYGTLEELELFTNVVEKWDVNH-VERLPNYMRMCFLFLYNEINQIGYDVLRDKGLNVIPYLKQVWTDLFKTFLTESKWYKTGHKPSFEEYMQNGVISSSVPTILLHLFSVLSDHISDQTLTDDSKNHSVVRSCATILRLANDLATSTEEMARGDSPKSVQCYMYETRASEEEARRHMQSMISDSW 538          
The following BLAST results are available for this feature:
BLAST of FC925249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RLC1_CITLI1.049e-13698.34(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS_QUEIL3.101e-8059.75Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS1_CANSA3.931e-6752.07(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
MYRS2_ARATH3.115e-6449.58Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
TPS2_CANSA4.068e-6451.91(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
CINS_ARATH5.314e-6449.581,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
SSS_SALOF1.546e-6349.16(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
SCS_SALOF3.808e-6247.061,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
MYRS1_ARATH9.379e-6147.70Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
TPS02_ARATH1.354e-5943.88Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG05FM1 TF Citrus clementina cDNA clone KN0AAP8YG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925249 ID=FC925249; Name=FC925249; organism=Citrus clementina; type=EST; length=724bp
GAAGGATACAGGTCTTGGAGAGAAATTGAGCTTTGCGAGGAACAGGTTGG
TAGCGTCCTTCTTATGGAGCATGGGGATCGCGTTTGAGCCTCAATTCGCC
TACTGCAGGAGAGTGCTCACAATCTCGATAGCCCTAATTACAGTGATTGA
TGACATTTATGATGTCTATGGAACATTGGATGAACTTGAGATATTCACTG
ATGCTGTTGCGAGGTGGGACATCAATTATGCTTTGAAGCACCTTCCGGGC
TATATGAAAATGTGTTTTCTTGCCCTTTACAACTTTGTTAATGAATTTGC
TTATTACGTTCTCAAACAACAGGATTTTGATATGCTTCTGAGCATAAAAC
ATGCATGGCTTGGCTTAATACAAGCCTACTTGGTGGAGGCGAAATGGTAC
CATAGCAAGTACACACCGAAACTGGAAGAATACTTGGAAAATGGATTGGT
ATCAATAACGGGCCCTTTAATTATAACGATTTCATATCTTTCTGGTACAA
ATCCAATCATTAAGAAGGAACTGGAATTTCTAGAAAGTAATCCAGATATA
GTTCACTGGTCATCCAAGATTTTCCGTCTGCAAGATGATTTGGGAACTTC
ATCGGACGAGATACAGAGAGGGGATGTTCCGAAATCAATCCAGTGTTACA
TGCATGAAACTGGTGCCTCGGAGGAAGTTGCTCGTGAACACATCAAGGAT
ATGATGAGACAGATGTGGAAGAAG
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