FC925276

Overview
NameFC925276
Unique NameFC925276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15337 contig Ccv1_Contig15337:139..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 6.950e-50
Identity = 108/224 (48.21%), Postives = 138/224 (61.61%), Query Frame = 3
Query:   27 MARMKPQALLIPSKRKKGPTPISAKTXXXXXXXXXXXXXXXXXTYRHWSHSQRSNEQIGNESSTVEDDAYVVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSK-GFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP*SDV 695
            MA++KPQALL  SK+KKGP+ IS                     YR W+H  RS     N  S +ED A+   K  DLP  A L+T KG + +ELFKD +P  VD+F+  CQ GYFKG  F  V+K++VIQAG S +  A  +W      R  + TS KHE FM+GT K+K+ + GFE +I +A I DLN+KL VFGRV KG+DVVQEIEEV+TD+ YQP S +
Sbjct:    1 MAKIKPQALLQQSKKKKGPSRISITNIVIYTLAVLLLVFVLFSAYRRWTH--RSEIPTHNGRSVLEDAAFPGMKNVDLPRFATLDTGKGSVTIELFKDTAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAVKDWALD---RKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPI 219          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 52/167 (31.14%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  189 NEQIGNESSTVEDDAYVVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV--KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP 683
            N    +  + +++D ++  KK     +A + T+ G I VELF D  P+T   FI+L + GY+  + FH  IK ++IQ G         E   +     +++T+ KH+A  + ++  + KD+ G + +IT A  P L+    VFG+VV G DV+ ++E +  DE  +P
Sbjct:  262 NAYTASTRALIDEDEFMY-KKIKKKSYARIITNYGNINVELFSDKKPKTCHNFIELAKTGYYNDVIFHRNIKKFMIQGGDPTGTGKGGESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESIPVDEKDRP 427          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  270 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV----DTDEPYQ 680
            A+++TS G I ++LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V     TD+PY+
Sbjct:  492 AIIHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYE 634          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  270 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV----DTDEPYQ 680
            A+++TS G I  +LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V     TD+PY+
Sbjct:  494 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYE 636          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  270 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV----DTDEPYQ 680
            A+++TS G I  +LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V     TD+PY+
Sbjct:  494 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYE 636          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  270 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV----DTDEPYQ 680
            A+++TS G I ++LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V     TD+PY+
Sbjct:  494 AIVHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNVKVNPQTDKPYE 636          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 49/148 (33.11%), Postives = 79/148 (53.38%), Query Frame = 3
Query:  291 GYIIVELFKDGSPETVDKFIDLC-----------QKGYFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP*SDV 695
            G I++EL+ D +P T + F+ LC           +  ++KG +FH VIKN++IQ G  +K      E    G    +       E F++    K  ++ G + +ITT P P LN+  +VFG+VV G++VV +IE + T+   +P +DV
Sbjct:   21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADV 168          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  279 NTSKGYIIVELFKDGSPETVDKFIDLC--QKG--------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP 683
            NT  G ++ EL+ D  P+T + F  LC  +KG        ++KG SFH VIKN+++Q G           +  G+  +      KH+   +    + K++ G + +ITTA  P LN    VFG VV+G D+V+++E  +TD   +P
Sbjct:   17 NTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHKIGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRP 162          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 48/155 (30.97%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  270 AVLNTSKGYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP*SDV 695
            A+ N   G ++ ELF D  P+T + F  LC  +KG         ++K   FH V+K++++Q G  S+      E    G    +      ++ F++    + KD+ G + +ITT P P L+   +VFG+V+ G++VV+EIE   TD   +P ++V
Sbjct:   15 AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEV 169          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 48/155 (30.97%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  270 AVLNTSKGYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP*SDV 695
            A+ N   G ++ ELF D  P+T + F  LC  +KG         ++K   FH V+K++++Q G  S+      E    G    +      ++ F++    + KD+ G + +ITT P P L+   +VFG+V+ G++VV+EIE   TD   +P ++V
Sbjct:   15 AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEV 169          
The following BLAST results are available for this feature:
BLAST of FC925276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CP21C_ARATH6.950e-5048.21Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]
PPIL2_RHIOR1.563e-1731.14Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
PPWD1_BOVIN8.575e-1632.87Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_PONAB1.910e-1532.87Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN1.910e-1532.87Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_MOUSE3.259e-1532.87Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYP1_BRUMA9.481e-1533.11Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPID_DICDI2.112e-1432.88Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIG_RAT3.603e-1430.97Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE3.603e-1430.97Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB16FM1 TF Citrus clementina cDNA clone KN0AAP11YB16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925276 ID=FC925276; Name=FC925276; organism=Citrus clementina; type=EST; length=696bp
ATTTTCCCAAATAAAGTTTCCGCATCATGGCGAGGATGAAACCGCAGGCT
TTGTTAATTCCAAGCAAAAGGAAGAAGGGGCCTACACCAATCAGTGCCAA
GACCATCCTCATTTGCAATTTAATTGTCGTGTTGATAGTGTTGTGCTTAG
TTGTCACATATAGACATTGGTCGCATTCACAAAGGTCAAATGAACAAATA
GGGAATGAATCGTCAACCGTTGAGGATGATGCCTATGTGGTTTCAAAGAA
GTTTGATCTTCCTGGCCATGCTGTTTTAAATACATCTAAAGGTTATATAA
TAGTGGAACTCTTCAAAGATGGTTCACCTGAAACCGTGGATAAATTTATT
GACTTGTGTCAAAAGGGGTACTTCAAAGGTATGTCTTTCCATCATGTGAT
CAAAAACTATGTCATTCAAGCTGGGCATTCCAAGGATCTTGCAGCTGCTG
ATGAATGGACATCAAGAGGGAAGATCCGCAGTCAGCTGAGGACCAGTCCG
AAGCATGAGGCGTTTATGATTGGAACTGTAAAATCTAAAGACAGCAAAGG
ATTTGAGCTATACATTACAACTGCACCCATACCAGATTTAAATGATAAGC
TTATTGTGTTTGGACGAGTAGTGAAGGGTGAGGATGTGGTGCAGGAAATT
GAAGAGGTGGATACCGATGAGCCCTATCAGCCCTAGTCAGATGTAG
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