FC925281

Overview
NameFC925281
Unique NameFC925281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925281_ssr197 microsatellite FC925281_ssr197:197..208. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14618 contig Ccv1_Contig14618:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925281 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.862e-67
Identity = 124/172 (72.09%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  229 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRSSAKRAIYICGRPRWVFVLIFSCVSFIPWYVSCGLLTVPWALAV 744
            MDWGNVT +DL DALREVDWSSPPRP SEFFSRFTVP+S  KW+SRLKCNLYYYRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP LAAKMRPPLTPV RGR S+KRAI++CG+PRWVFVL  S VSF  WY+S GLL V  AL +
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLI 172          
BLAST of FC925281 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.415e-60
Identity = 104/170 (61.18%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  229 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRSSAKRAIYICGRPRWVFVLIFSCVSFIPWYVSCGLLTVPWAL 738
            MDW NV AED+I+ALREV+WS+PPR   EFFSRF  PRS +KW SRLKCNLYYYRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+AAKMRPP  PVIRGRS+A++ +Y+CG+PRWVFV+ F   S + W+ SCGLL V +AL
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYAL 170          
BLAST of FC925281 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.004e-58
Identity = 105/170 (61.76%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  229 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRSSAKRAIYICGRPRWVFVLIFSCVSFIPWYVSCGLLTVPWAL 738
            MDW +V AED+I+ALREV+WS+ PR L+EFFSRF  PRS +KW SRLKCNLYYYRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHLAAKMRPP  PVIRGRS+ ++ +YICG+PR VFVL+    SF+ W+ SCGLL V +AL
Sbjct:    1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYAL 170          
The following BLAST results are available for this feature:
BLAST of FC925281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH1.862e-6772.09PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH6.415e-6061.18PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH6.004e-5861.76PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YB19FM1 TF Citrus clementina cDNA clone KN0AAP11YB19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925281 ID=FC925281; Name=FC925281; organism=Citrus clementina; type=EST; length=744bp
TTTCACAACTGTCCCTTGCCGTTAAGTCATTCCCTGGCTCACTGCACAAG
TCCCATTCAATTTAATTCTCTTCATCACATCGCAGGAAACCCACAGCCAC
AGCCTCCACTCTTTCTTAATCTGCCTAGGGTTTCGCGGATCATTTTATTT
TGCACAAAATAAATCGTTTTCTAGGGTTTCGGAAGAGCGGAATATTATAA
TAATAATAACAATAGTAGTAATCAAGCGATGGATTGGGGAAACGTAACAG
CAGAAGATCTTATCGACGCGCTTCGTGAAGTTGACTGGTCGTCTCCACCG
CGTCCTCTCTCCGAGTTCTTCTCCAGGTTCACCGTTCCGAGATCCTCCGC
CAAATGGAACAGCCGATTGAAATGCAATCTTTACTACTACCGAACAAACT
ACTTTATCATGATTACTGTCATTCTTGGGTTGGGTTTCCTAAGGAGACCT
GTTGCTATTATTGCTGCTCTTTTGACAGCCCTTAGTATTGCATTTCTCAA
TGACAGCTTTGCAGGTACTTTCAATGAGAAGGTGACAAGAACTGTGAGGC
AATTTTCTCCACATCTAGCTGCAAAGATGAGGCCTCCTCTTACACCTGTT
ATTCGTGGGCGCTCATCAGCGAAAAGAGCAATCTATATATGTGGTCGGCC
TCGTTGGGTGTTTGTCTTAATATTTTCTTGCGTAAGTTTCATCCCTTGGT
ATGTTTCCTGTGGTCTTTTGACTGTTCCATGGGCACTTGCTGTT
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