FC925287

Overview
NameFC925287
Unique NameFC925287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11330 contig Ccv1_Contig11330:24..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25
Identity = 65/169 (38.46%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  164 LDPKTNVDSKDVVYSPENNLS----ARLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVE 655
            +D  TN+ ++  +Y P + L       L L K  +  + +P+L++FHGG F   +A S  Y  +   LV+   ++ VSVDYRR+PEH  P AY+D W+A+ WV S V       WL    D    V+ +GDS+G NIAH++A+R   E   G  V+G +L+HP F G E
Sbjct:   69 VDSTTNLLTR--IYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE---GVKVLGNILLHPMFGGQE 225          
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 65/181 (35.91%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  152 VPPSLDPKTNVDSKDVVYSPENNLSARLYLP------------KNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVE 655
            VP + +P   V S DV+   + NL +R+Y P            +N    + +P++V+FHGG F   +A S  Y      LV     + VSV+YRRAPE+  P AY+D W  +KWV S         WL    D + ++F +GDS+G NI H++A+R     ID   V+G +L++P F G E
Sbjct:   53 VPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTE 223          
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 66/183 (36.07%), Postives = 95/183 (51.91%), Query Frame = 2
Query:  152 VPPSLDPKTNVDSKDVVYSPENNLSARLYLPKNTNQNQK--------------LPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVE 655
            V  + +P   V S DV+     NL +R+Y P   +Q Q               +P++++FHGG F   +A S  Y      LV     + VSV+YRRAPE+P P AY+D W A+ WV S         WL    D +  +F +GDS+G NIAH++A+R G     G +V+G +L++P F G E
Sbjct:   53 VTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNE 225          
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.147e-21
Identity = 67/205 (32.68%), Postives = 95/205 (46.34%), Query Frame = 2
Query:  116 DGKVERLRGTDI---VPPSLDPKTNVDSKDVVYSPENNLSARLYLPKNTNQNQK---------------------LPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVE 655
            DG  ER  G  +   VP +  P   V S D +      L  R+Y        ++                      P++++FHGG F   +A S  Y +     V  +  + VSV+YRRAPEH  P AY+D W A+KWV S       + ++    D + +VF SGDS+G NIAHH+A+R   E   G  V G +L++  F G E
Sbjct:   38 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE---GVKVCGNILLNAMFGGTE 232          
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  170 PKTNVDSKDVVYSPENNLSARLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNR-NADFEQVFYSGDSAGANIAHHMA 574
            P T+ ++  V  +  NN+  R+Y+PK  ++  +  L  Y HGGG+C+ +A    Y           +++ VS +YR APE+  PI +ED +DA+KW          +D L +   D E+V  SGDSAG N+A  +A
Sbjct:   71 PPTSDENVTVTETTFNNVPVRVYVPKRKSKTLRRGLF-YIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLR-------QDVLEKYGVDPERVGVSGDSAGGNLAAAVA 198          
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: LIP2_MORS1 (Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 2
Query:  191 KDVVYSPENNLSARLYLPKNTNQNQKLP---LLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFEQVFYSGDSAGANIA 562
            K +  +   +++ R Y     N  +K      +++FHGGGFCI      T+H + + + ++     VSVDYR APE+P P A +D   A  W+A H    G        A   ++  SGDSAG  +A
Sbjct:  129 KTIANADGGDMTVRCYQKSTQNSERKSTDEAAMLFFHGGGFCIGDI--DTHHEFCHTVCAQTGWAVVSVDYRMAPEYPAPTALKDCLAAYAWLAEHSQSLG--------ASPSRIVLSGDSAGGCLA 245          
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 47/162 (29.01%), Postives = 75/162 (46.30%), Query Frame = 2
Query:   95 PLIKVHKDGKVERLRGTDIVPPSLDPKTNVDSKDVVYSPENNLSA------RLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFEQVFYSGDSAGANIA 562
            P++K H    V+ LR    V P       V+S + +  P  +  A      R++ P  T      P  ++FHGGG+ +      T +++   +  +A  + V+VDYR APE P P   +D W+A+ +   + D  G    +N N    ++   G SAG NIA
Sbjct:   37 PIVKTHTY-PVDFLRNNGNVMPGQSELLPVESTEDITIPRKHTKAPSGVPSRIFRPHGTAPEGGWPCFLWFHGGGWVLGNI--NTENSFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLYCYENADTLG----INPN----KIAVGGSSAGGNIA 187          
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: AAAD_HUMAN (Arylacetamide deacetylase OS=Homo sapiens GN=AADAC PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 42/139 (30.22%), Postives = 67/139 (48.20%), Query Frame = 2
Query:  146 DIVPPSLDPKTNVDSKDVVYSPENNLSARLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFEQVFYSGDSAGANIA 562
            D VPP+ D    V          NN+  R+Y+PK  ++  +  L  Y HGGG+C+ +A    Y           + + VS +YR AP++  PI +ED ++A++W          +       + E++  SGDSAG N+A
Sbjct:   69 DEVPPTSDENVTVTETKF-----NNILVRVYVPKRKSEALRRGLF-YIHGGGWCVGSAALSGYDLLSRWTADRLDAVVVSTNYRLAPKYHFPIQFEDVYNALRWFLR------KKVLAKYGVNPERIGISGDSAGGNLA 195          
BLAST of FC925287 vs. ExPASy Swiss-Prot
Match: AAAD_BOVIN (Arylacetamide deacetylase OS=Bos taurus GN=AADAC PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 45/145 (31.03%), Postives = 77/145 (53.10%), Query Frame = 2
Query:  155 PPSLDPKTNVDSKDVVYSPENNLSARLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSE-----ANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFEQVFYSGDSAGANIAHHMA 574
            PP+ D   N+  KD  +   N++  R+Y+P+   ++ +  L  Y HGGG+C     S  Y++Y  DL+S       + + +S +YR AP++  P+ +ED + A+KW         P++  +   D  ++  SGDSAG N+A  +A
Sbjct:   72 PPTSDE--NIIVKDTTF---NDIPVRIYVPQQKTKSLRRGLF-YIHGGGWCFG---SNDYYSY--DLLSRWTAERLDAVVISTNYRLAPKYHFPVQFEDVYTALKWFLD------PQNLESYGVDPGRIGISGDSAGGNLAAAVA 199          
The following BLAST results are available for this feature:
BLAST of FC925287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GI1L2_ARATH7.017e-2538.46Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH7.758e-2435.91Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.013e-2336.07Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ6.147e-2132.68Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_RABIT1.466e-1434.56Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
LIP2_MORS11.162e-1132.28Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 P... [more]
YFZ3_SCHPO1.982e-1129.01AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
AAAD_HUMAN5.767e-1130.22Arylacetamide deacetylase OS=Homo sapiens GN=AADAC... [more]
AAAD_BOVIN7.531e-1131.03Arylacetamide deacetylase OS=Bos taurus GN=AADAC P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YF12FM1 TF Citrus clementina cDNA clone KN0AAP3YF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925287 ID=FC925287; Name=FC925287; organism=Citrus clementina; type=EST; length=661bp
TCTTTACAAAAGCTAACGCCCTCCACATTTTGTGCTCTGCTTCTTCTCCA
TGGATTCCGCCAACGCATCATCAGAAGTCGCCCATGACTTCTCTCCTTTG
ATAAAAGTACACAAAGACGGCAAAGTAGAAAGGCTTAGGGGCACCGATAT
CGTTCCCCCATCACTTGATCCCAAAACAAACGTTGATTCCAAAGACGTTG
TGTATTCTCCTGAAAATAATTTATCTGCTCGGCTTTACCTCCCGAAAAAC
ACAAATCAAAACCAAAAACTTCCCCTTCTTGTTTATTTTCACGGTGGAGG
TTTTTGCATCGAGACTGCTTTTTCACCAACTTACCATAATTACCTCAACG
ACTTGGTCTCTGAAGCTAACATCATCGCAGTCTCGGTCGACTACCGAAGA
GCCCCAGAGCATCCCCTTCCTATCGCTTATGAAGATTCATGGGATGCAGT
CAAATGGGTTGCTTCCCATGTTGACGGAAATGGCCCCGAAGATTGGCTCA
ACCGTAATGCTGATTTTGAGCAAGTGTTTTACTCTGGGGACAGCGCTGGT
GCTAATATTGCTCATCACATGGCAATAAGAAACGGTGGAGAAATTATCGA
CGGCTTTAATGTTGTTGGTATTGTCTTGATTCATCCATACTTTTGGGGTG
TTGAACCTGTT
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