FC925288

Overview
NameFC925288
Unique NameFC925288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15433 contig Ccv1_Contig15433:425..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A_ORYSJ (60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.842e-62
Identity = 116/141 (82.27%), Postives = 126/141 (89.36%), Query Frame = 2
Query:    2 KTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQXXXXXXXXXXXXXXXQRLT 424
            KTVE+KKPIVVKYGLNHVTYLIEQ+KAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGK+RLGSIVHKKTASVLCLTTVKNEDK+EFSKILEAIKANFNDK++E+RKKWGGG+MGSKSQ               QR+T
Sbjct:  118 KTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRMT 258          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.104e-61
Identity = 112/122 (91.80%), Postives = 118/122 (96.72%), Query Frame = 2
Query:    2 KTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 367
            K  ESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGKSRLG++VH+KTA+ LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:  116 KPAESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 237          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.104e-61
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 2
Query:    2 KTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 367
            K  ESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGKSRLG++VH+KTAS LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:  117 KPSESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 238          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.118e-41
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 2
Query:    2 KTVE-SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 364
            K VE  KKP  V  G N VT LIEQ KAQLVVIAHDVDP+ELV++LPALCRKM +PYCIVKGK+RLG +V +KT + L LTTV N DK  F K+LEA+K NFN+++EE+R+ WGGGI+GSKS
Sbjct:  130 KDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKS 251          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A_ICTPU (60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 8.897e-40
Identity = 75/119 (63.03%), Postives = 96/119 (80.67%), Query Frame = 2
Query:    8 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 364
            V +K+P VV+ G+N VT L+E  KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG +VH+KT + +C T    ED+   +K++EAIK N+ND+YEE+R+ WGG IMG KS
Sbjct:  128 VPTKRPPVVRAGVNTVTSLVESKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKS 246          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL8_SCHPO (60S ribosomal protein L8 OS=Schizosaccharomyces pombe GN=rpl8 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.162e-39
Identity = 77/118 (65.25%), Postives = 97/118 (82.20%), Query Frame = 2
Query:   14 SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 367
            SKKP  VKYGLNHV  LIE  KA+LV+IA DVDPIELVV+LPALC+KM +PY IVK K+RLG+++H+KTA+VL +T V+ EDK E + I+ A+ ANF+ KY+E R+KWGGGIMG K+Q
Sbjct:  126 SKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQ 243          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A_BOVIN (60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 71/119 (59.66%), Postives = 97/119 (81.51%), Query Frame = 2
Query:    8 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 364
            V +K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  128 VPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A_TAKRU (60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.285e-38
Identity = 72/117 (61.54%), Postives = 95/117 (81.20%), Query Frame = 2
Query:   14 SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 364
            +K+P V++ G+N +T L+E  KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG +VH+KT + +  T    EDK   +K++EAIK N+ND+YEE+R+ WGGGI+G KS
Sbjct:  130 TKRPPVLRAGVNTITSLVENKKAQLVVIAHDVDPIELVIFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVAFTQTNPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILGPKS 246          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A_RAT (60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.285e-38
Identity = 71/119 (59.66%), Postives = 97/119 (81.51%), Query Frame = 2
Query:    8 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 364
            V +K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  128 VPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of FC925288 vs. ExPASy Swiss-Prot
Match: RL7A_MOUSE (60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.285e-38
Identity = 71/119 (59.66%), Postives = 97/119 (81.51%), Query Frame = 2
Query:    8 VESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 364
            V +K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  128 VPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
The following BLAST results are available for this feature:
BLAST of FC925288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL7A_ORYSJ2.842e-6282.2760S ribosomal protein L7a OS=Oryza sativa subsp. j... [more]
RL7A2_ARATH4.104e-6191.8060S ribosomal protein L7a-2 OS=Arabidopsis thalian... [more]
RL7A1_ARATH4.104e-6192.6260S ribosomal protein L7a-1 OS=Arabidopsis thalian... [more]
RL7A_DROME2.118e-4167.2160S ribosomal protein L7a OS=Drosophila melanogast... [more]
RL7A_ICTPU8.897e-4063.0360S ribosomal protein L7a OS=Ictalurus punctatus G... [more]
RL8_SCHPO1.162e-3965.2560S ribosomal protein L8 OS=Schizosaccharomyces po... [more]
RL7A_BOVIN7.532e-3959.6660S ribosomal protein L7a OS=Bos taurus GN=RPL7A P... [more]
RL7A_TAKRU1.285e-3861.5460S ribosomal protein L7a OS=Takifugu rubripes GN=... [more]
RL7A_RAT1.285e-3859.6660S ribosomal protein L7a OS=Rattus norvegicus GN=... [more]
RL7A_MOUSE1.285e-3859.6660S ribosomal protein L7a OS=Mus musculus GN=Rpl7a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG24FM1 TF Citrus clementina cDNA clone KN0AAP8YG24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925288 ID=FC925288; Name=FC925288; organism=Citrus clementina; type=EST; length=620bp
GAAGACTGTGGAGTCTAAGAAGCCTATTGTTGTGAAATATGGCTTGAACC
ATGTGACATACCTCATTGAACAGAACAAGGCACAATTGGTTGTCATTGCT
CATGATGTTGACCCGATTGAGTTGGTTGTCTGGCTTCCTGCCTTGTGCAG
GAAGATGGAGATCCCATACTGCATTGTCAAAGGAAAATCACGTTTGGGAT
CGATTGTCCACAAGAAGACAGCTTCTGTATTGTGTTTGACAACAGTTAAG
AATGAGGATAAGATGGAATTCAGCAAGATCCTTGAGGCCATCAAGGCTAA
CTTCAACGACAAGTACGAGGAGTTAAGAAAGAAGTGGGGAGGTGGTATTA
TGGGCTCCAAATCACAGGCAAAAACCAAGGCCAAGGAGAAACTTCTTGCC
AAGGAAGCTGCTCAGAGGCTGACCTAGGATTTTGCTCAGTCTTAAGAGAG
TCCCAATGTTTTGTTATTTCTTGTGCTTTCATCATCTTTTTATTTTAATG
AACATGTTTCTATGTAGTCTCTTAGCATTTTACCTTATTAAGATTTTTAA
TTGAACTTCTGAACTGTTATATGTTTGCACCATTAGTATGTGCCTTTTTG
ATAAAAAAAAAAAAAAAAAA
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